Hb_000011_420

Information

Type -
Description -
Location Contig11: 441815-443509
Sequence    

Annotation

kegg
ID dosa:Os02t0668900-00
description Os02g0668900; Similar to H0211B05.3 protein.
nr
ID XP_006465155.1
description PREDICTED: GDSL esterase/lipase At1g29660-like [Citrus sinensis]
swissprot
ID Q9SIF3
description GDSL esterase/lipase At2g04020 OS=Arabidopsis thaliana GN=At2g04020 PE=3 SV=2
trembl
ID A0A0D2RD31
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G117500 PE=4 SV=1
Gene Ontology
ID GO:0016788
description zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_420 0.0 - - PREDICTED: GDSL esterase/lipase At1g29660-like [Citrus sinensis]
2 Hb_002527_050 0.1608450863 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
3 Hb_002291_010 0.1884538026 - - ring finger protein, putative [Ricinus communis]
4 Hb_149515_010 0.1993313992 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
5 Hb_000853_060 0.2061897375 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
6 Hb_028811_010 0.2087099635 - - PREDICTED: uncharacterized protein LOC105650178 isoform X1 [Jatropha curcas]
7 Hb_011909_010 0.2089470545 - - PREDICTED: uncharacterized protein LOC100246941 [Vitis vinifera]
8 Hb_006453_010 0.2092995699 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
9 Hb_000649_180 0.2094203919 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
10 Hb_152868_030 0.2159341535 - - abhydrolase domain containing, putative [Ricinus communis]
11 Hb_002486_010 0.2170467116 - - PREDICTED: sister chromatid cohesion 1 protein 1 [Jatropha curcas]
12 Hb_008145_010 0.2194327251 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
13 Hb_009193_100 0.2197992599 - - hypothetical protein JCGZ_15709 [Jatropha curcas]
14 Hb_029904_010 0.2202715282 - - PREDICTED: uncharacterized protein LOC105635075 [Jatropha curcas]
15 Hb_029385_010 0.2235950183 - - CTP synthase family protein [Populus trichocarpa]
16 Hb_001776_190 0.2248292666 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
17 Hb_002291_020 0.2264443853 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
18 Hb_074506_010 0.227409777 - - JHL25H03.10 [Jatropha curcas]
19 Hb_000414_110 0.2309426464 - - PREDICTED: MATE efflux family protein 5 isoform X1 [Populus euphratica]
20 Hb_012340_060 0.2378517248 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000011_420 Hb_000011_420 Hb_002527_050 Hb_002527_050 Hb_000011_420--Hb_002527_050 Hb_002291_010 Hb_002291_010 Hb_000011_420--Hb_002291_010 Hb_149515_010 Hb_149515_010 Hb_000011_420--Hb_149515_010 Hb_000853_060 Hb_000853_060 Hb_000011_420--Hb_000853_060 Hb_028811_010 Hb_028811_010 Hb_000011_420--Hb_028811_010 Hb_011909_010 Hb_011909_010 Hb_000011_420--Hb_011909_010 Hb_000649_180 Hb_000649_180 Hb_002527_050--Hb_000649_180 Hb_012565_040 Hb_012565_040 Hb_002527_050--Hb_012565_040 Hb_002170_020 Hb_002170_020 Hb_002527_050--Hb_002170_020 Hb_002291_020 Hb_002291_020 Hb_002527_050--Hb_002291_020 Hb_009193_100 Hb_009193_100 Hb_002527_050--Hb_009193_100 Hb_001486_030 Hb_001486_030 Hb_002291_010--Hb_001486_030 Hb_002291_010--Hb_028811_010 Hb_001341_100 Hb_001341_100 Hb_002291_010--Hb_001341_100 Hb_003207_010 Hb_003207_010 Hb_002291_010--Hb_003207_010 Hb_001171_050 Hb_001171_050 Hb_002291_010--Hb_001171_050 Hb_004064_010 Hb_004064_010 Hb_002291_010--Hb_004064_010 Hb_008145_010 Hb_008145_010 Hb_149515_010--Hb_008145_010 Hb_149515_010--Hb_011909_010 Hb_149515_010--Hb_000649_180 Hb_149515_010--Hb_002291_020 Hb_007919_040 Hb_007919_040 Hb_149515_010--Hb_007919_040 Hb_000141_010 Hb_000141_010 Hb_149515_010--Hb_000141_010 Hb_000165_210 Hb_000165_210 Hb_000853_060--Hb_000165_210 Hb_000853_060--Hb_007919_040 Hb_003120_040 Hb_003120_040 Hb_000853_060--Hb_003120_040 Hb_006573_300 Hb_006573_300 Hb_000853_060--Hb_006573_300 Hb_001114_070 Hb_001114_070 Hb_000853_060--Hb_001114_070 Hb_029584_090 Hb_029584_090 Hb_000853_060--Hb_029584_090 Hb_028811_010--Hb_001486_030 Hb_001623_160 Hb_001623_160 Hb_028811_010--Hb_001623_160 Hb_001214_090 Hb_001214_090 Hb_028811_010--Hb_001214_090 Hb_000414_110 Hb_000414_110 Hb_028811_010--Hb_000414_110 Hb_028811_010--Hb_011909_010 Hb_028811_010--Hb_004064_010 Hb_000345_320 Hb_000345_320 Hb_011909_010--Hb_000345_320 Hb_000317_350 Hb_000317_350 Hb_011909_010--Hb_000317_350 Hb_000209_100 Hb_000209_100 Hb_011909_010--Hb_000209_100 Hb_082741_010 Hb_082741_010 Hb_011909_010--Hb_082741_010 Hb_000205_250 Hb_000205_250 Hb_011909_010--Hb_000205_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.114234 0.611519 0.397719 0.356984 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.208892 0.295767 0.915844 1.60682 0.475421

CAGE analysis