Hb_000011_470

Information

Type -
Description -
Location Contig11: 465703-468902
Sequence    

Annotation

kegg
ID cmo:103485923
description uncharacterized LOC103485923
nr
ID XP_008441928.1
description PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5BVC1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027174 PE=4 SV=1
Gene Ontology
ID GO:0000166
description gag-pol polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_470 0.0 - - PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]
2 Hb_000405_010 0.1467064358 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
3 Hb_029238_030 0.1536012474 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
4 Hb_011892_010 0.1565557363 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_011931_090 0.1566888031 - - -
6 Hb_054127_020 0.1728736691 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
7 Hb_151401_010 0.1730386678 - - -
8 Hb_004375_020 0.1833430255 - - hypothetical protein VITISV_034560 [Vitis vinifera]
9 Hb_049285_010 0.1848638585 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
10 Hb_013420_050 0.1873508805 - - hypothetical protein (mitochondrion) [Vicia faba]
11 Hb_001490_020 0.1878595342 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_006356_030 0.1883059237 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
13 Hb_000923_110 0.1892871921 - - PREDICTED: uncharacterized protein LOC102624489 [Citrus sinensis]
14 Hb_000432_020 0.190239487 desease resistance Gene Name: Tropomyosin_1 PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
15 Hb_006111_040 0.1906369219 - - PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]
16 Hb_000522_030 0.1917607947 - - hypothetical protein VITISV_006017 [Vitis vinifera]
17 Hb_000920_020 0.193857884 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
18 Hb_008918_030 0.1959726166 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
19 Hb_042463_070 0.1966818393 - - 60S ribosomal protein L16, putative [Ricinus communis]
20 Hb_027917_010 0.1967160842 - - PREDICTED: uncharacterized protein LOC103699089, partial [Phoenix dactylifera]

Gene co-expression network

sample Hb_000011_470 Hb_000011_470 Hb_000405_010 Hb_000405_010 Hb_000011_470--Hb_000405_010 Hb_029238_030 Hb_029238_030 Hb_000011_470--Hb_029238_030 Hb_011892_010 Hb_011892_010 Hb_000011_470--Hb_011892_010 Hb_011931_090 Hb_011931_090 Hb_000011_470--Hb_011931_090 Hb_054127_020 Hb_054127_020 Hb_000011_470--Hb_054127_020 Hb_151401_010 Hb_151401_010 Hb_000011_470--Hb_151401_010 Hb_000405_010--Hb_011931_090 Hb_000405_010--Hb_054127_020 Hb_000432_020 Hb_000432_020 Hb_000405_010--Hb_000432_020 Hb_000522_030 Hb_000522_030 Hb_000405_010--Hb_000522_030 Hb_150516_010 Hb_150516_010 Hb_000405_010--Hb_150516_010 Hb_027917_010 Hb_027917_010 Hb_000405_010--Hb_027917_010 Hb_001490_020 Hb_001490_020 Hb_029238_030--Hb_001490_020 Hb_029238_030--Hb_011892_010 Hb_003414_040 Hb_003414_040 Hb_029238_030--Hb_003414_040 Hb_049285_010 Hb_049285_010 Hb_029238_030--Hb_049285_010 Hb_029238_030--Hb_000405_010 Hb_011892_010--Hb_150516_010 Hb_011892_010--Hb_011931_090 Hb_011892_010--Hb_000405_010 Hb_011892_010--Hb_000522_030 Hb_011931_090--Hb_000522_030 Hb_011931_090--Hb_150516_010 Hb_005623_060 Hb_005623_060 Hb_011931_090--Hb_005623_060 Hb_014109_020 Hb_014109_020 Hb_011931_090--Hb_014109_020 Hb_023386_030 Hb_023386_030 Hb_011931_090--Hb_023386_030 Hb_006356_030 Hb_006356_030 Hb_054127_020--Hb_006356_030 Hb_000923_110 Hb_000923_110 Hb_054127_020--Hb_000923_110 Hb_004445_030 Hb_004445_030 Hb_054127_020--Hb_004445_030 Hb_002576_010 Hb_002576_010 Hb_054127_020--Hb_002576_010 Hb_047923_030 Hb_047923_030 Hb_054127_020--Hb_047923_030 Hb_151401_010--Hb_000432_020 Hb_007533_050 Hb_007533_050 Hb_151401_010--Hb_007533_050 Hb_144838_010 Hb_144838_010 Hb_151401_010--Hb_144838_010 Hb_151401_010--Hb_003414_040 Hb_003311_020 Hb_003311_020 Hb_151401_010--Hb_003311_020 Hb_093388_010 Hb_093388_010 Hb_151401_010--Hb_093388_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00933833 0.0431821 0.0215244 0 0 0.00816975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0212151 0.016693 0 0.106205 1.13071

CAGE analysis