Hb_000011_480

Information

Type -
Description -
Location Contig11: 472627-492879
Sequence    

Annotation

kegg
ID rcu:RCOM_0354350
description zinc finger protein, putative
nr
ID XP_002533920.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9LJP2
description GDSL esterase/lipase At3g14220 OS=Arabidopsis thaliana GN=At3g14220 PE=1 SV=1
trembl
ID B9T6Q1
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0354350 PE=4 SV=1
Gene Ontology
ID GO:0016788
description zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_480 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_000243_110 0.2039160751 - - PREDICTED: WAT1-related protein At3g53210-like [Jatropha curcas]
3 Hb_000541_020 0.2074812352 - - -
4 Hb_059379_020 0.254422445 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
5 Hb_004041_090 0.2673820337 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006054_020 0.2676140791 - - conserved hypothetical protein [Ricinus communis]
7 Hb_022250_120 0.2711913927 - - PREDICTED: uncharacterized protein LOC105648689 [Jatropha curcas]
8 Hb_000191_160 0.3022394457 - - hypothetical protein EUGRSUZ_C03547 [Eucalyptus grandis]
9 Hb_000025_020 0.3047325477 - - PREDICTED: cytochrome P450 71B34-like [Jatropha curcas]
10 Hb_037960_010 0.305038677 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_001486_140 0.3079709735 - - PREDICTED: probable glycosyltransferase At5g03795 [Vitis vinifera]
12 Hb_000412_050 0.3100164242 - - hypothetical protein POPTR_0017s04140g [Populus trichocarpa]
13 Hb_003025_010 0.3110744293 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X2 [Populus euphratica]
14 Hb_000097_040 0.3123256368 transcription factor TF Family: MYB myb domain protein [Hevea brasiliensis]
15 Hb_004894_010 0.3138642478 - - -
16 Hb_034585_020 0.3144667749 - - -
17 Hb_001410_100 0.3153459291 - - hypothetical protein EUGRSUZ_B00966 [Eucalyptus grandis]
18 Hb_013652_010 0.3175170366 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_010174_140 0.3177607406 - - Alpha-L-fucosidase 2 precursor, putative [Ricinus communis]
20 Hb_001652_040 0.3189418574 - - PREDICTED: uncharacterized protein LOC103341683 [Prunus mume]

Gene co-expression network

sample Hb_000011_480 Hb_000011_480 Hb_000243_110 Hb_000243_110 Hb_000011_480--Hb_000243_110 Hb_000541_020 Hb_000541_020 Hb_000011_480--Hb_000541_020 Hb_059379_020 Hb_059379_020 Hb_000011_480--Hb_059379_020 Hb_004041_090 Hb_004041_090 Hb_000011_480--Hb_004041_090 Hb_006054_020 Hb_006054_020 Hb_000011_480--Hb_006054_020 Hb_022250_120 Hb_022250_120 Hb_000011_480--Hb_022250_120 Hb_004894_010 Hb_004894_010 Hb_000243_110--Hb_004894_010 Hb_037960_010 Hb_037960_010 Hb_000243_110--Hb_037960_010 Hb_000025_020 Hb_000025_020 Hb_000243_110--Hb_000025_020 Hb_001410_100 Hb_001410_100 Hb_000243_110--Hb_001410_100 Hb_000483_110 Hb_000483_110 Hb_000243_110--Hb_000483_110 Hb_000541_020--Hb_004041_090 Hb_003010_040 Hb_003010_040 Hb_000541_020--Hb_003010_040 Hb_000541_020--Hb_059379_020 Hb_014113_010 Hb_014113_010 Hb_000541_020--Hb_014113_010 Hb_003085_050 Hb_003085_050 Hb_000541_020--Hb_003085_050 Hb_002027_310 Hb_002027_310 Hb_059379_020--Hb_002027_310 Hb_013652_010 Hb_013652_010 Hb_059379_020--Hb_013652_010 Hb_002376_030 Hb_002376_030 Hb_059379_020--Hb_002376_030 Hb_009230_040 Hb_009230_040 Hb_059379_020--Hb_009230_040 Hb_002498_040 Hb_002498_040 Hb_059379_020--Hb_002498_040 Hb_002374_110 Hb_002374_110 Hb_059379_020--Hb_002374_110 Hb_004041_090--Hb_003085_050 Hb_002766_040 Hb_002766_040 Hb_004041_090--Hb_002766_040 Hb_157122_010 Hb_157122_010 Hb_004041_090--Hb_157122_010 Hb_002553_080 Hb_002553_080 Hb_004041_090--Hb_002553_080 Hb_004041_090--Hb_003010_040 Hb_004102_050 Hb_004102_050 Hb_006054_020--Hb_004102_050 Hb_003025_010 Hb_003025_010 Hb_006054_020--Hb_003025_010 Hb_001921_020 Hb_001921_020 Hb_006054_020--Hb_001921_020 Hb_000191_160 Hb_000191_160 Hb_006054_020--Hb_000191_160 Hb_046417_010 Hb_046417_010 Hb_006054_020--Hb_046417_010 Hb_001486_140 Hb_001486_140 Hb_006054_020--Hb_001486_140 Hb_000958_030 Hb_000958_030 Hb_022250_120--Hb_000958_030 Hb_000097_040 Hb_000097_040 Hb_022250_120--Hb_000097_040 Hb_002325_020 Hb_002325_020 Hb_022250_120--Hb_002325_020 Hb_003428_100 Hb_003428_100 Hb_022250_120--Hb_003428_100 Hb_022250_120--Hb_000025_020 Hb_002046_100 Hb_002046_100 Hb_022250_120--Hb_002046_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0344964 0.0303869 0.00304741 0.0125319 0.0391208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.141794 0

CAGE analysis