Hb_000011_570

Information

Type -
Description -
Location Contig11: 551333-557976
Sequence    

Annotation

kegg
ID pop:POPTR_0003s06880g
description POPTRDRAFT_415156; hypothetical protein
nr
ID XP_012068822.1
description PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
swissprot
ID A5BUU4
description 40S ribosomal protein SA OS=Vitis vinifera GN=GSVIVT00034021001 PE=3 SV=1
trembl
ID A0A067KWW8
description 40S ribosomal protein SA OS=Jatropha curcas GN=JCGZ_24651 PE=3 SV=1
Gene Ontology
ID GO:0022627
description 40s ribosomal protein sa-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03034: 551477-552363 , PASA_asmbl_03035: 555369-557939 , PASA_asmbl_03036: 555458-556132
cDNA
(Sanger)
(ID:Location)		 050_H03.ab1: 556143-557939

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_570 0.0 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
2 Hb_000676_140 0.0582136613 - - structural constituent of ribosome, putative [Ricinus communis]
3 Hb_000866_240 0.1227132836 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
4 Hb_001016_150 0.1271557305 - - Rop1 [Hevea brasiliensis]
5 Hb_004709_010 0.1286035904 - - hypothetical protein B456_007G097300 [Gossypium raimondii]
6 Hb_000185_050 0.1330557308 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
7 Hb_014720_040 0.1346272267 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
8 Hb_002811_170 0.1372048631 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
9 Hb_001728_030 0.1376465321 - - 60S ribosomal protein L15 [Populus trichocarpa]
10 Hb_002192_010 0.1391730909 - - -
11 Hb_001863_430 0.1401510583 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
12 Hb_007747_050 0.1425142749 - - Peptidyl-prolyl cis-trans isomerase cypE, putative [Ricinus communis]
13 Hb_124953_020 0.1442459923 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
14 Hb_003106_220 0.1456520579 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
15 Hb_009476_020 0.1476657921 - - tryptophan biosynthesis protein, putative [Ricinus communis]
16 Hb_001712_070 0.1478785591 - - PREDICTED: HD domain-containing protein 2 [Jatropha curcas]
17 Hb_002078_140 0.1479541719 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
18 Hb_004800_060 0.1479706368 - - PREDICTED: uncharacterized protein LOC105643856 [Jatropha curcas]
19 Hb_000836_470 0.1488853044 - - -
20 Hb_000465_390 0.1493078854 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]

Gene co-expression network

sample Hb_000011_570 Hb_000011_570 Hb_000676_140 Hb_000676_140 Hb_000011_570--Hb_000676_140 Hb_000866_240 Hb_000866_240 Hb_000011_570--Hb_000866_240 Hb_001016_150 Hb_001016_150 Hb_000011_570--Hb_001016_150 Hb_004709_010 Hb_004709_010 Hb_000011_570--Hb_004709_010 Hb_000185_050 Hb_000185_050 Hb_000011_570--Hb_000185_050 Hb_014720_040 Hb_014720_040 Hb_000011_570--Hb_014720_040 Hb_000676_140--Hb_004709_010 Hb_000676_140--Hb_000866_240 Hb_000676_140--Hb_014720_040 Hb_000676_140--Hb_001016_150 Hb_001863_430 Hb_001863_430 Hb_000676_140--Hb_001863_430 Hb_000866_240--Hb_001863_430 Hb_009476_020 Hb_009476_020 Hb_000866_240--Hb_009476_020 Hb_000155_160 Hb_000155_160 Hb_000866_240--Hb_000155_160 Hb_000035_370 Hb_000035_370 Hb_000866_240--Hb_000035_370 Hb_000506_070 Hb_000506_070 Hb_000866_240--Hb_000506_070 Hb_124953_020 Hb_124953_020 Hb_001016_150--Hb_124953_020 Hb_001016_150--Hb_001863_430 Hb_002078_140 Hb_002078_140 Hb_001016_150--Hb_002078_140 Hb_001341_150 Hb_001341_150 Hb_001016_150--Hb_001341_150 Hb_002811_170 Hb_002811_170 Hb_001016_150--Hb_002811_170 Hb_001016_150--Hb_000506_070 Hb_002686_110 Hb_002686_110 Hb_004709_010--Hb_002686_110 Hb_005667_040 Hb_005667_040 Hb_004709_010--Hb_005667_040 Hb_004709_010--Hb_014720_040 Hb_011330_020 Hb_011330_020 Hb_004709_010--Hb_011330_020 Hb_087749_010 Hb_087749_010 Hb_004709_010--Hb_087749_010 Hb_001472_100 Hb_001472_100 Hb_000185_050--Hb_001472_100 Hb_002946_190 Hb_002946_190 Hb_000185_050--Hb_002946_190 Hb_000731_160 Hb_000731_160 Hb_000185_050--Hb_000731_160 Hb_111036_010 Hb_111036_010 Hb_000185_050--Hb_111036_010 Hb_000690_190 Hb_000690_190 Hb_000185_050--Hb_000690_190 Hb_003942_020 Hb_003942_020 Hb_000185_050--Hb_003942_020 Hb_014720_040--Hb_001016_150 Hb_014720_040--Hb_005667_040 Hb_003894_070 Hb_003894_070 Hb_014720_040--Hb_003894_070 Hb_000836_470 Hb_000836_470 Hb_014720_040--Hb_000836_470 Hb_000005_090 Hb_000005_090 Hb_014720_040--Hb_000005_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2597 16.1341 38.3278 28.9604 20.341 26.5968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.8036 82.9022 5.05379 30.6143 15.5825

CAGE analysis