Hb_000012_100

Information

Type -
Description -
Location Contig12: 205434-208863
Sequence    

Annotation

kegg
ID rcu:RCOM_0798480
description hypothetical protein
nr
ID NP_001295623.1
description UPF0587 protein C1orf123 homolog [Jatropha curcas]
swissprot
ID Q3B8G0
description UPF0587 protein C1orf123 homolog OS=Xenopus laevis PE=2 SV=1
trembl
ID D6BRE7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07701 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05981: 205506-208815 , PASA_asmbl_05983: 205913-206302
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_100 0.0 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
2 Hb_000181_300 0.0519464222 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
3 Hb_000193_120 0.0622490415 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
4 Hb_001634_040 0.0725843305 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
5 Hb_004156_040 0.0736307712 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
6 Hb_003053_030 0.0744925256 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
7 Hb_006573_220 0.0775337933 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
8 Hb_001191_090 0.0790828373 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
9 Hb_000103_010 0.0813788848 - - 20S proteasome beta subunit D2 [Hevea brasiliensis]
10 Hb_002876_120 0.0837198945 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
11 Hb_002603_150 0.0841139733 - - PREDICTED: protein yippee-like [Jatropha curcas]
12 Hb_000329_330 0.084730344 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
13 Hb_003376_030 0.0867138412 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
14 Hb_001687_040 0.0871665024 - - actin-depolymerizing factor [Hevea brasiliensis]
15 Hb_001314_040 0.0879086058 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
16 Hb_148200_010 0.0879223336 - - hypothetical protein 33 [Hevea brasiliensis]
17 Hb_002374_390 0.0888412797 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
18 Hb_000027_150 0.0907171289 - - mitochondrial carrier protein, putative [Ricinus communis]
19 Hb_002097_060 0.0909606469 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
20 Hb_000062_390 0.0910987593 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000012_100 Hb_000012_100 Hb_000181_300 Hb_000181_300 Hb_000012_100--Hb_000181_300 Hb_000193_120 Hb_000193_120 Hb_000012_100--Hb_000193_120 Hb_001634_040 Hb_001634_040 Hb_000012_100--Hb_001634_040 Hb_004156_040 Hb_004156_040 Hb_000012_100--Hb_004156_040 Hb_003053_030 Hb_003053_030 Hb_000012_100--Hb_003053_030 Hb_006573_220 Hb_006573_220 Hb_000012_100--Hb_006573_220 Hb_000181_300--Hb_000193_120 Hb_000181_300--Hb_003053_030 Hb_001191_090 Hb_001191_090 Hb_000181_300--Hb_001191_090 Hb_002374_390 Hb_002374_390 Hb_000181_300--Hb_002374_390 Hb_000103_010 Hb_000103_010 Hb_000181_300--Hb_000103_010 Hb_000193_120--Hb_000103_010 Hb_000193_120--Hb_004156_040 Hb_000193_120--Hb_001634_040 Hb_001016_090 Hb_001016_090 Hb_000193_120--Hb_001016_090 Hb_007575_070 Hb_007575_070 Hb_001634_040--Hb_007575_070 Hb_000062_390 Hb_000062_390 Hb_001634_040--Hb_000062_390 Hb_000805_130 Hb_000805_130 Hb_001634_040--Hb_000805_130 Hb_001634_040--Hb_000181_300 Hb_148200_010 Hb_148200_010 Hb_004156_040--Hb_148200_010 Hb_004156_040--Hb_003053_030 Hb_004156_040--Hb_001191_090 Hb_004156_040--Hb_000181_300 Hb_003053_030--Hb_001191_090 Hb_003053_030--Hb_148200_010 Hb_000364_030 Hb_000364_030 Hb_003053_030--Hb_000364_030 Hb_003994_040 Hb_003994_040 Hb_003053_030--Hb_003994_040 Hb_006573_220--Hb_001191_090 Hb_000329_330 Hb_000329_330 Hb_006573_220--Hb_000329_330 Hb_001687_040 Hb_001687_040 Hb_006573_220--Hb_001687_040 Hb_002097_060 Hb_002097_060 Hb_006573_220--Hb_002097_060 Hb_003376_030 Hb_003376_030 Hb_006573_220--Hb_003376_030 Hb_007382_150 Hb_007382_150 Hb_006573_220--Hb_007382_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.6445 24.9918 65.2147 63.5938 57.9462 63.3669
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
251.911 318.182 195.873 62.4897 42.4897

CAGE analysis