Hb_000012_110

Information

Type -
Description -
Location Contig12: 211462-216152
Sequence    

Annotation

kegg
ID cic:CICLE_v10008613mg
description hypothetical protein
nr
ID XP_006450782.1
description hypothetical protein CICLE_v10008613mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID A0A067GXE2
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g016651mg PE=4 SV=1
Gene Ontology
ID GO:0016020
description core-2 i-branching beta- -n-acetylglucosaminyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05984: 211801-212012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_110 0.0 - - hypothetical protein CICLE_v10008613mg [Citrus clementina]
2 Hb_004007_110 0.0829108833 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
3 Hb_001998_200 0.086182866 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
4 Hb_002615_030 0.0975577884 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
5 Hb_007590_090 0.0976473162 - - PREDICTED: O-glucosyltransferase rumi [Jatropha curcas]
6 Hb_003602_060 0.1153245197 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
7 Hb_015057_020 0.1157467545 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
8 Hb_000032_370 0.1164784318 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
9 Hb_001975_030 0.1198176311 - - 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase, partial [Plectranthus barbatus]
10 Hb_002217_100 0.1206708343 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase dihydrolipoamide dehydrogenase, putative [Ricinus communis]
11 Hb_001817_100 0.1222274272 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
12 Hb_000599_210 0.1277717341 - - serine/threonine-protein kinase, putative [Ricinus communis]
13 Hb_004317_030 0.1280150947 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
14 Hb_000139_340 0.1284214468 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000210_060 0.1320989825 transcription factor TF Family: E2F-DP hypothetical protein JCGZ_08780 [Jatropha curcas]
16 Hb_000110_060 0.1328074852 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
17 Hb_000428_060 0.1341499148 - - malate dehydrogenase, putative [Ricinus communis]
18 Hb_005218_080 0.134506915 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_065525_120 0.1347439218 - - dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]
20 Hb_007441_080 0.1379102447 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]

Gene co-expression network

sample Hb_000012_110 Hb_000012_110 Hb_004007_110 Hb_004007_110 Hb_000012_110--Hb_004007_110 Hb_001998_200 Hb_001998_200 Hb_000012_110--Hb_001998_200 Hb_002615_030 Hb_002615_030 Hb_000012_110--Hb_002615_030 Hb_007590_090 Hb_007590_090 Hb_000012_110--Hb_007590_090 Hb_003602_060 Hb_003602_060 Hb_000012_110--Hb_003602_060 Hb_015057_020 Hb_015057_020 Hb_000012_110--Hb_015057_020 Hb_004007_110--Hb_007590_090 Hb_002110_100 Hb_002110_100 Hb_004007_110--Hb_002110_100 Hb_004158_020 Hb_004158_020 Hb_004007_110--Hb_004158_020 Hb_028049_010 Hb_028049_010 Hb_004007_110--Hb_028049_010 Hb_012305_130 Hb_012305_130 Hb_004007_110--Hb_012305_130 Hb_001998_200--Hb_007590_090 Hb_001817_100 Hb_001817_100 Hb_001998_200--Hb_001817_100 Hb_001998_200--Hb_004007_110 Hb_001998_200--Hb_002615_030 Hb_001998_200--Hb_003602_060 Hb_000023_310 Hb_000023_310 Hb_002615_030--Hb_000023_310 Hb_005016_010 Hb_005016_010 Hb_002615_030--Hb_005016_010 Hb_002615_030--Hb_007590_090 Hb_000599_210 Hb_000599_210 Hb_002615_030--Hb_000599_210 Hb_000110_060 Hb_000110_060 Hb_002615_030--Hb_000110_060 Hb_000365_010 Hb_000365_010 Hb_002615_030--Hb_000365_010 Hb_007590_090--Hb_001817_100 Hb_002217_100 Hb_002217_100 Hb_007590_090--Hb_002217_100 Hb_154038_020 Hb_154038_020 Hb_003602_060--Hb_154038_020 Hb_093458_010 Hb_093458_010 Hb_003602_060--Hb_093458_010 Hb_027506_040 Hb_027506_040 Hb_003602_060--Hb_027506_040 Hb_007441_080 Hb_007441_080 Hb_003602_060--Hb_007441_080 Hb_001863_070 Hb_001863_070 Hb_003602_060--Hb_001863_070 Hb_002007_320 Hb_002007_320 Hb_003602_060--Hb_002007_320 Hb_032920_070 Hb_032920_070 Hb_015057_020--Hb_032920_070 Hb_000210_060 Hb_000210_060 Hb_015057_020--Hb_000210_060 Hb_001728_040 Hb_001728_040 Hb_015057_020--Hb_001728_040 Hb_002477_290 Hb_002477_290 Hb_015057_020--Hb_002477_290 Hb_005276_040 Hb_005276_040 Hb_015057_020--Hb_005276_040 Hb_006538_090 Hb_006538_090 Hb_015057_020--Hb_006538_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.586354 1.41036 2.70935 4.40667 0.154122 0.321341
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.10759 3.41078 1.60566 2.3403 3.8567

CAGE analysis