Hb_000012_130

Information

Type -
Description -
Location Contig12: 232030-239187
Sequence    

Annotation

kegg
ID gmx:100807540
description uncharacterized LOC100807540
nr
ID XP_006578074.1
description PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
swissprot
ID -
description -
trembl
ID I1JTV5
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05986: 234260-236929 , PASA_asmbl_05987: 232314-234473 , PASA_asmbl_05988: 236341-236680 , PASA_asmbl_05989: 236949-239150
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_130 0.0 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
2 Hb_024714_060 0.0849001031 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
3 Hb_001439_170 0.0849948205 - - PREDICTED: pectinesterase 31-like isoform X2 [Jatropha curcas]
4 Hb_007594_120 0.0935304934 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
5 Hb_002027_400 0.0979290726 - - PREDICTED: auxin response factor 23-like [Jatropha curcas]
6 Hb_002759_230 0.1020877791 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
7 Hb_001160_030 0.1076625523 transcription factor TF Family: Alfin-like hypothetical protein POPTR_0018s05470g [Populus trichocarpa]
8 Hb_007140_020 0.1091267301 - - hypothetical protein CICLE_v10008419mg [Citrus clementina]
9 Hb_044662_070 0.1104164298 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
10 Hb_002876_120 0.1107007385 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
11 Hb_007924_020 0.1136014349 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_002119_120 0.113952728 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
13 Hb_001687_040 0.115630622 - - actin-depolymerizing factor [Hevea brasiliensis]
14 Hb_001616_030 0.1159406807 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
15 Hb_001711_030 0.1161614629 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
16 Hb_003376_030 0.1162093892 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
17 Hb_000069_100 0.1163673996 - - conserved hypothetical protein [Ricinus communis]
18 Hb_020301_040 0.1164513872 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
19 Hb_001912_010 0.1170777642 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
20 Hb_006573_220 0.11734687 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000012_130 Hb_000012_130 Hb_024714_060 Hb_024714_060 Hb_000012_130--Hb_024714_060 Hb_001439_170 Hb_001439_170 Hb_000012_130--Hb_001439_170 Hb_007594_120 Hb_007594_120 Hb_000012_130--Hb_007594_120 Hb_002027_400 Hb_002027_400 Hb_000012_130--Hb_002027_400 Hb_002759_230 Hb_002759_230 Hb_000012_130--Hb_002759_230 Hb_001160_030 Hb_001160_030 Hb_000012_130--Hb_001160_030 Hb_001006_180 Hb_001006_180 Hb_024714_060--Hb_001006_180 Hb_009265_060 Hb_009265_060 Hb_024714_060--Hb_009265_060 Hb_001762_060 Hb_001762_060 Hb_024714_060--Hb_001762_060 Hb_024714_060--Hb_007594_120 Hb_006831_030 Hb_006831_030 Hb_024714_060--Hb_006831_030 Hb_001711_030 Hb_001711_030 Hb_001439_170--Hb_001711_030 Hb_001863_480 Hb_001863_480 Hb_001439_170--Hb_001863_480 Hb_002119_120 Hb_002119_120 Hb_001439_170--Hb_002119_120 Hb_044662_070 Hb_044662_070 Hb_001439_170--Hb_044662_070 Hb_002539_080 Hb_002539_080 Hb_001439_170--Hb_002539_080 Hb_002876_120 Hb_002876_120 Hb_007594_120--Hb_002876_120 Hb_000975_300 Hb_000975_300 Hb_007594_120--Hb_000975_300 Hb_000069_550 Hb_000069_550 Hb_007594_120--Hb_000069_550 Hb_000062_340 Hb_000062_340 Hb_007594_120--Hb_000062_340 Hb_020301_040 Hb_020301_040 Hb_007594_120--Hb_020301_040 Hb_002027_400--Hb_001160_030 Hb_002027_400--Hb_002759_230 Hb_002909_060 Hb_002909_060 Hb_002027_400--Hb_002909_060 Hb_002027_400--Hb_001439_170 Hb_028487_030 Hb_028487_030 Hb_002027_400--Hb_028487_030 Hb_000188_130 Hb_000188_130 Hb_002759_230--Hb_000188_130 Hb_000212_260 Hb_000212_260 Hb_002759_230--Hb_000212_260 Hb_002759_230--Hb_002909_060 Hb_000099_060 Hb_000099_060 Hb_002759_230--Hb_000099_060 Hb_001912_010 Hb_001912_010 Hb_002759_230--Hb_001912_010 Hb_003581_090 Hb_003581_090 Hb_002759_230--Hb_003581_090 Hb_003376_030 Hb_003376_030 Hb_001160_030--Hb_003376_030 Hb_002097_060 Hb_002097_060 Hb_001160_030--Hb_002097_060 Hb_001616_060 Hb_001616_060 Hb_001160_030--Hb_001616_060 Hb_001575_020 Hb_001575_020 Hb_001160_030--Hb_001575_020 Hb_000146_020 Hb_000146_020 Hb_001160_030--Hb_000146_020 Hb_001616_030 Hb_001616_030 Hb_001160_030--Hb_001616_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.7735 4.90549 13.5258 9.56539 16.0097 13.7752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.4902 60.1697 59.466 8.91176 9.58236

CAGE analysis