Hb_000012_140

Information

Type -
Description -
Location Contig12: 248346-253111
Sequence    

Annotation

kegg
ID rcu:RCOM_0798440
description hypothetical protein
nr
ID XP_002516474.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8BTI8
description Serine/arginine repetitive matrix protein 2 OS=Mus musculus GN=Srrm2 PE=1 SV=3
trembl
ID B9RRV5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0798440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05990: 248469-253175 , PASA_asmbl_05991: 248469-251911 , PASA_asmbl_05992: 251942-253110
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005539_090 0.0701456132 transcription factor TF Family: PHD PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]
3 Hb_007576_120 0.072570698 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
4 Hb_001143_250 0.072829854 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
5 Hb_002022_070 0.0761088514 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
6 Hb_034243_020 0.0791798473 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
7 Hb_004543_030 0.0800700328 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
8 Hb_000960_100 0.0801718986 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
9 Hb_004884_010 0.0802230629 - - PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Jatropha curcas]
10 Hb_000139_090 0.0809229599 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
11 Hb_000345_150 0.0836974561 - - PREDICTED: uncharacterized protein LOC105647517 isoform X1 [Jatropha curcas]
12 Hb_003994_100 0.0863012231 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
13 Hb_004480_040 0.086800598 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
14 Hb_002524_040 0.0887255829 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
15 Hb_004108_100 0.0909342726 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X2 [Jatropha curcas]
16 Hb_144831_010 0.0915401133 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
17 Hb_010315_090 0.0922454139 - - suppressor of ty, putative [Ricinus communis]
18 Hb_000032_010 0.0954450491 - - crooked neck protein, putative [Ricinus communis]
19 Hb_133047_010 0.0964407768 - - xanthine dehydrogenase, putative [Ricinus communis]
20 Hb_019153_020 0.0967097333 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000012_140 Hb_000012_140 Hb_005539_090 Hb_005539_090 Hb_000012_140--Hb_005539_090 Hb_007576_120 Hb_007576_120 Hb_000012_140--Hb_007576_120 Hb_001143_250 Hb_001143_250 Hb_000012_140--Hb_001143_250 Hb_002022_070 Hb_002022_070 Hb_000012_140--Hb_002022_070 Hb_034243_020 Hb_034243_020 Hb_000012_140--Hb_034243_020 Hb_004543_030 Hb_004543_030 Hb_000012_140--Hb_004543_030 Hb_005539_090--Hb_007576_120 Hb_004483_040 Hb_004483_040 Hb_005539_090--Hb_004483_040 Hb_000977_120 Hb_000977_120 Hb_005539_090--Hb_000977_120 Hb_000321_150 Hb_000321_150 Hb_005539_090--Hb_000321_150 Hb_000960_100 Hb_000960_100 Hb_005539_090--Hb_000960_100 Hb_007576_120--Hb_004543_030 Hb_007576_120--Hb_034243_020 Hb_001493_040 Hb_001493_040 Hb_007576_120--Hb_001493_040 Hb_000139_090 Hb_000139_090 Hb_007576_120--Hb_000139_090 Hb_000418_140 Hb_000418_140 Hb_001143_250--Hb_000418_140 Hb_003633_070 Hb_003633_070 Hb_001143_250--Hb_003633_070 Hb_001799_050 Hb_001799_050 Hb_001143_250--Hb_001799_050 Hb_001143_250--Hb_002022_070 Hb_007307_020 Hb_007307_020 Hb_001143_250--Hb_007307_020 Hb_027760_080 Hb_027760_080 Hb_001143_250--Hb_027760_080 Hb_002022_070--Hb_000960_100 Hb_000025_320 Hb_000025_320 Hb_002022_070--Hb_000025_320 Hb_004884_010 Hb_004884_010 Hb_002022_070--Hb_004884_010 Hb_001021_200 Hb_001021_200 Hb_002022_070--Hb_001021_200 Hb_004108_100 Hb_004108_100 Hb_002022_070--Hb_004108_100 Hb_000028_510 Hb_000028_510 Hb_002022_070--Hb_000028_510 Hb_034243_020--Hb_004543_030 Hb_034243_020--Hb_004884_010 Hb_034243_020--Hb_001493_040 Hb_010315_090 Hb_010315_090 Hb_034243_020--Hb_010315_090 Hb_133047_010 Hb_133047_010 Hb_034243_020--Hb_133047_010 Hb_002524_040 Hb_002524_040 Hb_004543_030--Hb_002524_040 Hb_004718_010 Hb_004718_010 Hb_004543_030--Hb_004718_010 Hb_000997_030 Hb_000997_030 Hb_004543_030--Hb_000997_030 Hb_004543_030--Hb_010315_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
90.176 90.6266 30.7693 25.3735 76.6399 60.7161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.6455 21.7794 43.7121 46.6315 63.7444

CAGE analysis