Hb_000012_160

Information

Type -
Description -
Location Contig12: 273164-277172
Sequence    

Annotation

kegg
ID rcu:RCOM_0798410
description hypothetical protein
nr
ID XP_012077323.1
description PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQN1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07695 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05995: 276090-276239
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_160 0.0 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
2 Hb_005282_020 0.1085677459 - - hypothetical protein PRUPE_ppa019056mg, partial [Prunus persica]
3 Hb_003544_010 0.1153086726 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_002518_120 0.1358034953 - - hypothetical protein RCOM_0731250 [Ricinus communis]
5 Hb_007894_220 0.1446844485 - - PREDICTED: probable folate-biopterin transporter 4 [Jatropha curcas]
6 Hb_002685_060 0.1536622015 - - 30S ribosomal protein S5, putative [Ricinus communis]
7 Hb_002282_070 0.1566227653 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
8 Hb_001889_010 0.1581421655 transcription factor TF Family: Orphans PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2 [Jatropha curcas]
9 Hb_002534_030 0.1609234178 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
10 Hb_002671_130 0.1627319131 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
11 Hb_067069_010 0.1631372649 - - hypothetical protein JCGZ_11524 [Jatropha curcas]
12 Hb_005588_110 0.1641863623 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
13 Hb_016461_030 0.1645265704 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_011386_020 0.1657749899 - - unnamed protein product [Vitis vinifera]
15 Hb_000676_200 0.166770498 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
16 Hb_032258_010 0.1676293356 - - hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
17 Hb_003581_290 0.1678355632 - - PREDICTED: UDP-galactose/UDP-glucose transporter 3 [Fragaria vesca subsp. vesca]
18 Hb_003994_110 0.1684621731 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
19 Hb_000608_170 0.1687470118 - - F23N19.4 [Arabidopsis thaliana]
20 Hb_001595_080 0.1694499835 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000012_160 Hb_000012_160 Hb_005282_020 Hb_005282_020 Hb_000012_160--Hb_005282_020 Hb_003544_010 Hb_003544_010 Hb_000012_160--Hb_003544_010 Hb_002518_120 Hb_002518_120 Hb_000012_160--Hb_002518_120 Hb_007894_220 Hb_007894_220 Hb_000012_160--Hb_007894_220 Hb_002685_060 Hb_002685_060 Hb_000012_160--Hb_002685_060 Hb_002282_070 Hb_002282_070 Hb_000012_160--Hb_002282_070 Hb_005282_020--Hb_003544_010 Hb_000676_200 Hb_000676_200 Hb_005282_020--Hb_000676_200 Hb_000608_170 Hb_000608_170 Hb_005282_020--Hb_000608_170 Hb_005282_020--Hb_002685_060 Hb_000318_130 Hb_000318_130 Hb_005282_020--Hb_000318_130 Hb_003994_110 Hb_003994_110 Hb_003544_010--Hb_003994_110 Hb_011386_020 Hb_011386_020 Hb_003544_010--Hb_011386_020 Hb_001824_090 Hb_001824_090 Hb_003544_010--Hb_001824_090 Hb_003475_020 Hb_003475_020 Hb_003544_010--Hb_003475_020 Hb_000010_290 Hb_000010_290 Hb_002518_120--Hb_000010_290 Hb_032258_010 Hb_032258_010 Hb_002518_120--Hb_032258_010 Hb_015026_080 Hb_015026_080 Hb_002518_120--Hb_015026_080 Hb_002518_120--Hb_002282_070 Hb_002518_120--Hb_003475_020 Hb_030131_030 Hb_030131_030 Hb_002518_120--Hb_030131_030 Hb_000296_080 Hb_000296_080 Hb_007894_220--Hb_000296_080 Hb_007894_220--Hb_002518_120 Hb_001427_040 Hb_001427_040 Hb_007894_220--Hb_001427_040 Hb_007894_220--Hb_032258_010 Hb_007894_220--Hb_002282_070 Hb_003777_020 Hb_003777_020 Hb_002685_060--Hb_003777_020 Hb_002685_060--Hb_002282_070 Hb_016461_030 Hb_016461_030 Hb_002685_060--Hb_016461_030 Hb_007054_070 Hb_007054_070 Hb_002685_060--Hb_007054_070 Hb_000661_090 Hb_000661_090 Hb_002685_060--Hb_000661_090 Hb_005276_010 Hb_005276_010 Hb_002685_060--Hb_005276_010 Hb_002282_070--Hb_001427_040 Hb_002282_070--Hb_016461_030 Hb_000345_370 Hb_000345_370 Hb_002282_070--Hb_000345_370 Hb_002282_070--Hb_003777_020 Hb_000144_060 Hb_000144_060 Hb_002282_070--Hb_000144_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.205985 0.108779 0.318172 0.181352 0.177314 0.318219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.541688 0.266204 0.385139 0.495689 1.92325

CAGE analysis