Hb_000012_220

Information

Type -
Description -
Location Contig12: 312140-317544
Sequence    

Annotation

kegg
ID rcu:RCOM_0104680
description hypothetical protein
nr
ID XP_002532174.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T1Q5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0104680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05997: 312102-317176 , PASA_asmbl_05999: 313481-313831 , PASA_asmbl_06000: 313906-314140 , PASA_asmbl_06002: 312614-312780
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_220 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005322_040 0.0678259282 - - 60S ribosomal protein L9, putative [Ricinus communis]
3 Hb_000127_180 0.0783275187 - - 40S ribosomal protein S18, putative [Ricinus communis]
4 Hb_003528_060 0.0789886007 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
5 Hb_003050_080 0.0826451051 - - 40S ribosomal protein S14, putative [Ricinus communis]
6 Hb_000487_250 0.0843020722 - - 60S ribosomal protein L27e, putative [Ricinus communis]
7 Hb_002868_010 0.0851542408 - - 60S ribosomal protein L30, putative [Ricinus communis]
8 Hb_021419_020 0.0856640073 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
9 Hb_003641_020 0.087361396 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]
10 Hb_001314_100 0.0889696727 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
11 Hb_002660_080 0.0907377022 - - 60S ribosomal protein L12A [Hevea brasiliensis]
12 Hb_012573_070 0.0916134501 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000056_200 0.0916600844 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
14 Hb_114893_030 0.0917399922 - - PREDICTED: ribosome-recycling factor, chloroplastic [Jatropha curcas]
15 Hb_012762_050 0.0921633267 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
16 Hb_001540_010 0.0925053159 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
17 Hb_002112_020 0.0928567469 - - 60S ribosomal protein L9, putative [Ricinus communis]
18 Hb_005045_060 0.093016054 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
19 Hb_003939_080 0.0936338632 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000917_110 0.0938614366 - - PREDICTED: nudix hydrolase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000012_220 Hb_000012_220 Hb_005322_040 Hb_005322_040 Hb_000012_220--Hb_005322_040 Hb_000127_180 Hb_000127_180 Hb_000012_220--Hb_000127_180 Hb_003528_060 Hb_003528_060 Hb_000012_220--Hb_003528_060 Hb_003050_080 Hb_003050_080 Hb_000012_220--Hb_003050_080 Hb_000487_250 Hb_000487_250 Hb_000012_220--Hb_000487_250 Hb_002868_010 Hb_002868_010 Hb_000012_220--Hb_002868_010 Hb_004787_060 Hb_004787_060 Hb_005322_040--Hb_004787_060 Hb_010921_010 Hb_010921_010 Hb_005322_040--Hb_010921_010 Hb_013405_090 Hb_013405_090 Hb_005322_040--Hb_013405_090 Hb_011609_100 Hb_011609_100 Hb_005322_040--Hb_011609_100 Hb_001512_060 Hb_001512_060 Hb_005322_040--Hb_001512_060 Hb_002768_030 Hb_002768_030 Hb_000127_180--Hb_002768_030 Hb_001780_040 Hb_001780_040 Hb_000127_180--Hb_001780_040 Hb_002518_080 Hb_002518_080 Hb_000127_180--Hb_002518_080 Hb_001504_110 Hb_001504_110 Hb_000127_180--Hb_001504_110 Hb_001832_060 Hb_001832_060 Hb_000127_180--Hb_001832_060 Hb_000025_620 Hb_000025_620 Hb_000127_180--Hb_000025_620 Hb_012573_070 Hb_012573_070 Hb_003528_060--Hb_012573_070 Hb_001538_120 Hb_001538_120 Hb_003528_060--Hb_001538_120 Hb_003927_140 Hb_003927_140 Hb_003528_060--Hb_003927_140 Hb_003528_060--Hb_013405_090 Hb_182305_020 Hb_182305_020 Hb_003528_060--Hb_182305_020 Hb_001818_020 Hb_001818_020 Hb_003528_060--Hb_001818_020 Hb_063716_050 Hb_063716_050 Hb_003050_080--Hb_063716_050 Hb_002686_020 Hb_002686_020 Hb_003050_080--Hb_002686_020 Hb_000832_140 Hb_000832_140 Hb_003050_080--Hb_000832_140 Hb_001489_060 Hb_001489_060 Hb_003050_080--Hb_001489_060 Hb_001540_010 Hb_001540_010 Hb_003050_080--Hb_001540_010 Hb_000056_200 Hb_000056_200 Hb_003050_080--Hb_000056_200 Hb_005618_140 Hb_005618_140 Hb_000487_250--Hb_005618_140 Hb_000487_250--Hb_001818_020 Hb_000970_010 Hb_000970_010 Hb_000487_250--Hb_000970_010 Hb_000025_530 Hb_000025_530 Hb_000487_250--Hb_000025_530 Hb_007617_020 Hb_007617_020 Hb_000487_250--Hb_007617_020 Hb_003939_080 Hb_003939_080 Hb_002868_010--Hb_003939_080 Hb_001946_210 Hb_001946_210 Hb_002868_010--Hb_001946_210 Hb_002007_060 Hb_002007_060 Hb_002868_010--Hb_002007_060 Hb_000000_160 Hb_000000_160 Hb_002868_010--Hb_000000_160 Hb_011360_140 Hb_011360_140 Hb_002868_010--Hb_011360_140 Hb_001512_070 Hb_001512_070 Hb_002868_010--Hb_001512_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.4314 14.5902 22.3421 16.5039 29.9084 34.4054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.1273 80.0747 26.7991 15.8602 10.3703

CAGE analysis