Hb_000012_260

Information

Type -
Description -
Location Contig12: 359739-366255
Sequence    

Annotation

kegg
ID pop:POPTR_0018s05010g
description POPTRDRAFT_825640; hypothetical protein
nr
ID KHG21146.1
description Far upstream element-binding 2 [Gossypium arboreum]
swissprot
ID Q96AE4
description Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1 PE=1 SV=3
trembl
ID A0A0B0PCN7
description Far upstream element-binding 2 OS=Gossypium arboreum GN=F383_26926 PE=4 SV=1
Gene Ontology
ID GO:0003723
description kh domain-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06008: 363580-366168 , PASA_asmbl_06009: 359842-363542 , PASA_asmbl_06010: 359738-366272
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_260 0.0 - - Far upstream element-binding 2 [Gossypium arboreum]
2 Hb_003835_070 0.0595559886 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
3 Hb_000656_380 0.0605031856 - - PREDICTED: exportin-T [Jatropha curcas]
4 Hb_023226_080 0.0662322096 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
5 Hb_000614_210 0.0667787224 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
6 Hb_003058_060 0.0717992495 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
7 Hb_000107_660 0.0731637756 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
8 Hb_005542_140 0.0754965595 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
9 Hb_009615_170 0.0765003083 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
10 Hb_002217_170 0.0765759439 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
11 Hb_159558_010 0.0788017172 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
12 Hb_162275_050 0.0790814352 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
13 Hb_017862_020 0.0793472804 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
14 Hb_000579_230 0.080082366 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
15 Hb_011618_090 0.0801240246 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
16 Hb_001550_060 0.0807902098 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
17 Hb_000494_070 0.0826130261 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
18 Hb_033772_030 0.0835521162 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
19 Hb_002784_020 0.0838163357 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
20 Hb_105105_010 0.0839049068 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]

Gene co-expression network

sample Hb_000012_260 Hb_000012_260 Hb_003835_070 Hb_003835_070 Hb_000012_260--Hb_003835_070 Hb_000656_380 Hb_000656_380 Hb_000012_260--Hb_000656_380 Hb_023226_080 Hb_023226_080 Hb_000012_260--Hb_023226_080 Hb_000614_210 Hb_000614_210 Hb_000012_260--Hb_000614_210 Hb_003058_060 Hb_003058_060 Hb_000012_260--Hb_003058_060 Hb_000107_660 Hb_000107_660 Hb_000012_260--Hb_000107_660 Hb_002205_250 Hb_002205_250 Hb_003835_070--Hb_002205_250 Hb_002217_170 Hb_002217_170 Hb_003835_070--Hb_002217_170 Hb_003835_070--Hb_000614_210 Hb_105105_010 Hb_105105_010 Hb_003835_070--Hb_105105_010 Hb_012194_030 Hb_012194_030 Hb_003835_070--Hb_012194_030 Hb_011618_090 Hb_011618_090 Hb_003835_070--Hb_011618_090 Hb_000494_070 Hb_000494_070 Hb_000656_380--Hb_000494_070 Hb_000173_490 Hb_000173_490 Hb_000656_380--Hb_000173_490 Hb_000579_230 Hb_000579_230 Hb_000656_380--Hb_000579_230 Hb_001946_340 Hb_001946_340 Hb_000656_380--Hb_001946_340 Hb_002784_020 Hb_002784_020 Hb_000656_380--Hb_002784_020 Hb_005542_140 Hb_005542_140 Hb_023226_080--Hb_005542_140 Hb_000176_100 Hb_000176_100 Hb_023226_080--Hb_000176_100 Hb_000069_410 Hb_000069_410 Hb_023226_080--Hb_000069_410 Hb_159558_010 Hb_159558_010 Hb_023226_080--Hb_159558_010 Hb_009615_170 Hb_009615_170 Hb_023226_080--Hb_009615_170 Hb_000614_210--Hb_159558_010 Hb_000614_210--Hb_002205_250 Hb_001814_030 Hb_001814_030 Hb_000614_210--Hb_001814_030 Hb_162275_050 Hb_162275_050 Hb_000614_210--Hb_162275_050 Hb_000614_210--Hb_105105_010 Hb_000369_130 Hb_000369_130 Hb_003058_060--Hb_000369_130 Hb_001821_090 Hb_001821_090 Hb_003058_060--Hb_001821_090 Hb_002107_070 Hb_002107_070 Hb_003058_060--Hb_002107_070 Hb_002170_050 Hb_002170_050 Hb_003058_060--Hb_002170_050 Hb_003058_060--Hb_000579_230 Hb_104061_020 Hb_104061_020 Hb_003058_060--Hb_104061_020 Hb_000107_660--Hb_003835_070 Hb_003544_060 Hb_003544_060 Hb_000107_660--Hb_003544_060 Hb_002456_010 Hb_002456_010 Hb_000107_660--Hb_002456_010 Hb_000107_660--Hb_105105_010 Hb_000107_660--Hb_002217_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.6533 100.797 58.2569 44.9622 67.5797 73.0938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.6926 51.5562 63.8785 95.3216 48.4749

CAGE analysis