Hb_000012_270

Information

Type -
Description -
Location Contig12: 367759-370673
Sequence    

Annotation

kegg
ID rcu:RCOM_0798140
description NADH-plastoquinone oxidoreductase, putative (EC:1.6.99.3)
nr
ID XP_002516464.1
description NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
swissprot
ID P42027
description NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Brassica oleracea PE=2 SV=1
trembl
ID B9RRU5
description NADH-plastoquinone oxidoreductase, putative OS=Ricinus communis GN=RCOM_0798140 PE=3 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06011: 367788-370593 , PASA_asmbl_06013: 368573-368891
cDNA
(Sanger)
(ID:Location)		 023_G07.ab1: 370106-370590 , 039_G17.ab1: 368149-370590

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_270 0.0 - - NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
2 Hb_003228_100 0.0707686314 - - PREDICTED: kinesin-related protein 4 [Jatropha curcas]
3 Hb_000959_220 0.0741615565 - - zinc finger protein, putative [Ricinus communis]
4 Hb_005649_100 0.0818996361 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
5 Hb_005731_110 0.0851159074 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
6 Hb_005162_110 0.0885717093 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
7 Hb_143766_020 0.0909833713 - - putative phospholipase A2 [Gossypium arboreum]
8 Hb_002870_020 0.0913696764 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
9 Hb_000663_020 0.0925402601 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
10 Hb_006120_040 0.0949415101 - - PREDICTED: prostatic spermine-binding protein [Jatropha curcas]
11 Hb_012286_020 0.0961628579 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
12 Hb_001703_040 0.0963851803 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
13 Hb_000340_130 0.0968702758 - - PREDICTED: uncharacterized protein LOC105650033 isoform X1 [Jatropha curcas]
14 Hb_012438_030 0.0994628264 - - PREDICTED: protein sym-1 [Jatropha curcas]
15 Hb_002874_180 0.0995696893 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
16 Hb_002218_020 0.1002051665 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
17 Hb_006555_040 0.1019170007 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
18 Hb_002326_110 0.1023673919 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
19 Hb_000085_190 0.1023959922 - - FtsZ1 protein [Manihot esculenta]
20 Hb_003506_030 0.1041564003 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000012_270 Hb_000012_270 Hb_003228_100 Hb_003228_100 Hb_000012_270--Hb_003228_100 Hb_000959_220 Hb_000959_220 Hb_000012_270--Hb_000959_220 Hb_005649_100 Hb_005649_100 Hb_000012_270--Hb_005649_100 Hb_005731_110 Hb_005731_110 Hb_000012_270--Hb_005731_110 Hb_005162_110 Hb_005162_110 Hb_000012_270--Hb_005162_110 Hb_143766_020 Hb_143766_020 Hb_000012_270--Hb_143766_020 Hb_002870_020 Hb_002870_020 Hb_003228_100--Hb_002870_020 Hb_004032_370 Hb_004032_370 Hb_003228_100--Hb_004032_370 Hb_006846_170 Hb_006846_170 Hb_003228_100--Hb_006846_170 Hb_002326_110 Hb_002326_110 Hb_003228_100--Hb_002326_110 Hb_002249_020 Hb_002249_020 Hb_003228_100--Hb_002249_020 Hb_000959_220--Hb_005731_110 Hb_065755_030 Hb_065755_030 Hb_000959_220--Hb_065755_030 Hb_001322_020 Hb_001322_020 Hb_000959_220--Hb_001322_020 Hb_011249_030 Hb_011249_030 Hb_000959_220--Hb_011249_030 Hb_006615_050 Hb_006615_050 Hb_000959_220--Hb_006615_050 Hb_005649_100--Hb_002326_110 Hb_002909_040 Hb_002909_040 Hb_005649_100--Hb_002909_040 Hb_000940_050 Hb_000940_050 Hb_005649_100--Hb_000940_050 Hb_000207_200 Hb_000207_200 Hb_005649_100--Hb_000207_200 Hb_005649_100--Hb_003228_100 Hb_000640_160 Hb_000640_160 Hb_005731_110--Hb_000640_160 Hb_000663_020 Hb_000663_020 Hb_005731_110--Hb_000663_020 Hb_005731_110--Hb_005162_110 Hb_003225_020 Hb_003225_020 Hb_005731_110--Hb_003225_020 Hb_005731_110--Hb_065755_030 Hb_005946_040 Hb_005946_040 Hb_005162_110--Hb_005946_040 Hb_021650_010 Hb_021650_010 Hb_005162_110--Hb_021650_010 Hb_000003_170 Hb_000003_170 Hb_005162_110--Hb_000003_170 Hb_000051_060 Hb_000051_060 Hb_005162_110--Hb_000051_060 Hb_003752_070 Hb_003752_070 Hb_005162_110--Hb_003752_070 Hb_002284_210 Hb_002284_210 Hb_143766_020--Hb_002284_210 Hb_143766_020--Hb_000959_220 Hb_143766_020--Hb_000663_020 Hb_002874_180 Hb_002874_180 Hb_143766_020--Hb_002874_180 Hb_003760_030 Hb_003760_030 Hb_143766_020--Hb_003760_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.9262 62.3269 214.656 85.5272 74.3413 59.5613
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.8427 50.9558 63.4711 41.3785 91.1244

CAGE analysis