Hb_000012_300

Information

Type -
Description -
Location Contig12: 392896-393829
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06014: 394420-401719
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_300 0.0 - - -
2 Hb_001775_040 0.2060330153 - - -
3 Hb_001767_020 0.2064178985 - - PREDICTED: WAT1-related protein At1g68170-like, partial [Jatropha curcas]
4 Hb_002232_450 0.2131729189 - - PREDICTED: probable methyltransferase PMT11 [Jatropha curcas]
5 Hb_002890_230 0.2302346141 - - hypothetical protein MTR_5g084920 [Medicago truncatula]
6 Hb_001241_040 0.2405969738 - - -
7 Hb_041774_010 0.2474925247 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
8 Hb_005656_060 0.2488437 - - -
9 Hb_000103_360 0.2604432921 - - -
10 Hb_005867_080 0.262475506 - - PREDICTED: protein NETWORKED 2A [Jatropha curcas]
11 Hb_004460_020 0.2646693781 - - chaperone protein DNAj, putative [Ricinus communis]
12 Hb_004480_070 0.2653956731 - - cytochrome P450, putative [Ricinus communis]
13 Hb_001678_020 0.2715249082 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
14 Hb_001668_030 0.271527798 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007218_090 0.27196105 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
16 Hb_023323_010 0.285727458 - - PREDICTED: uncharacterized protein LOC104901296 [Beta vulgaris subsp. vulgaris]
17 Hb_010317_030 0.2889904951 - - unknown [Picea sitchensis]
18 Hb_098466_010 0.2955539989 - - PREDICTED: uncharacterized protein LOC105640954 [Jatropha curcas]
19 Hb_002253_110 0.2969368765 - - cysteine desulfurylase, putative [Ricinus communis]
20 Hb_000117_020 0.2971885797 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000012_300 Hb_000012_300 Hb_001775_040 Hb_001775_040 Hb_000012_300--Hb_001775_040 Hb_001767_020 Hb_001767_020 Hb_000012_300--Hb_001767_020 Hb_002232_450 Hb_002232_450 Hb_000012_300--Hb_002232_450 Hb_002890_230 Hb_002890_230 Hb_000012_300--Hb_002890_230 Hb_001241_040 Hb_001241_040 Hb_000012_300--Hb_001241_040 Hb_041774_010 Hb_041774_010 Hb_000012_300--Hb_041774_010 Hb_001775_040--Hb_001767_020 Hb_004460_020 Hb_004460_020 Hb_001775_040--Hb_004460_020 Hb_001668_030 Hb_001668_030 Hb_001775_040--Hb_001668_030 Hb_004480_070 Hb_004480_070 Hb_001775_040--Hb_004480_070 Hb_004102_130 Hb_004102_130 Hb_001775_040--Hb_004102_130 Hb_001767_020--Hb_004460_020 Hb_001767_020--Hb_041774_010 Hb_005867_080 Hb_005867_080 Hb_001767_020--Hb_005867_080 Hb_001767_020--Hb_001668_030 Hb_008147_030 Hb_008147_030 Hb_001767_020--Hb_008147_030 Hb_002028_100 Hb_002028_100 Hb_002232_450--Hb_002028_100 Hb_002733_030 Hb_002733_030 Hb_002232_450--Hb_002733_030 Hb_025457_010 Hb_025457_010 Hb_002232_450--Hb_025457_010 Hb_015707_010 Hb_015707_010 Hb_002232_450--Hb_015707_010 Hb_097968_010 Hb_097968_010 Hb_002232_450--Hb_097968_010 Hb_002890_230--Hb_041774_010 Hb_005656_060 Hb_005656_060 Hb_002890_230--Hb_005656_060 Hb_003073_130 Hb_003073_130 Hb_002890_230--Hb_003073_130 Hb_002890_230--Hb_001775_040 Hb_000457_160 Hb_000457_160 Hb_002890_230--Hb_000457_160 Hb_010290_020 Hb_010290_020 Hb_001241_040--Hb_010290_020 Hb_182310_010 Hb_182310_010 Hb_001241_040--Hb_182310_010 Hb_000563_280 Hb_000563_280 Hb_001241_040--Hb_000563_280 Hb_001604_110 Hb_001604_110 Hb_001241_040--Hb_001604_110 Hb_000831_040 Hb_000831_040 Hb_001241_040--Hb_000831_040 Hb_001892_160 Hb_001892_160 Hb_001241_040--Hb_001892_160 Hb_041774_010--Hb_003073_130 Hb_098466_010 Hb_098466_010 Hb_041774_010--Hb_098466_010 Hb_041774_010--Hb_001668_030 Hb_058884_010 Hb_058884_010 Hb_041774_010--Hb_058884_010 Hb_041774_010--Hb_005867_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.320688 0 0 0 0.476932 1.01834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.282335 0.15743 0

CAGE analysis