Hb_000012_310

Information

Type -
Description -
Location Contig12: 394112-401978
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24710g
description POPTRDRAFT_1081434; hypothetical protein
nr
ID XP_012077311.1
description PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
swissprot
ID Q39247
description Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=1 SV=1
trembl
ID A0A067KQL8
description Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Jatropha curcas GN=JCGZ_07685 PE=3 SV=1
Gene Ontology
ID GO:0000159
description serine threonine protein phosphatase 2a 55 kda regulatory subunit b beta isoform-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06014: 394420-401719 , PASA_asmbl_06016: 401757-401948
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_310 0.0 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
2 Hb_008748_030 0.0517328005 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006452_120 0.062401103 - - PREDICTED: protein FAM188A [Jatropha curcas]
4 Hb_001789_150 0.0627775639 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
5 Hb_006059_010 0.063077052 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
6 Hb_000574_450 0.0668512214 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
7 Hb_002660_170 0.0722235729 - - PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]
8 Hb_000029_140 0.0740135701 - - PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]
9 Hb_000109_180 0.0752518668 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
10 Hb_010515_020 0.0779054027 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
11 Hb_000504_180 0.078631117 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
12 Hb_000227_160 0.0799459448 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
13 Hb_007386_040 0.0825887722 - - PREDICTED: acyl-coenzyme A thioesterase 9, mitochondrial-like [Jatropha curcas]
14 Hb_149985_010 0.0844912696 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
15 Hb_004435_030 0.0856607464 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
16 Hb_028487_160 0.0862222502 - - clathrin assembly protein, putative [Ricinus communis]
17 Hb_001716_040 0.0863680196 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
18 Hb_000505_150 0.0863716389 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
19 Hb_000853_200 0.0881780002 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
20 Hb_002272_030 0.0890063085 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000012_310 Hb_000012_310 Hb_008748_030 Hb_008748_030 Hb_000012_310--Hb_008748_030 Hb_006452_120 Hb_006452_120 Hb_000012_310--Hb_006452_120 Hb_001789_150 Hb_001789_150 Hb_000012_310--Hb_001789_150 Hb_006059_010 Hb_006059_010 Hb_000012_310--Hb_006059_010 Hb_000574_450 Hb_000574_450 Hb_000012_310--Hb_000574_450 Hb_002660_170 Hb_002660_170 Hb_000012_310--Hb_002660_170 Hb_000227_160 Hb_000227_160 Hb_008748_030--Hb_000227_160 Hb_008748_030--Hb_006452_120 Hb_008748_030--Hb_000574_450 Hb_028487_160 Hb_028487_160 Hb_008748_030--Hb_028487_160 Hb_000778_010 Hb_000778_010 Hb_008748_030--Hb_000778_010 Hb_010515_020 Hb_010515_020 Hb_006452_120--Hb_010515_020 Hb_004030_080 Hb_004030_080 Hb_006452_120--Hb_004030_080 Hb_006452_120--Hb_000574_450 Hb_000984_170 Hb_000984_170 Hb_006452_120--Hb_000984_170 Hb_001789_150--Hb_000574_450 Hb_001789_150--Hb_010515_020 Hb_000497_300 Hb_000497_300 Hb_001789_150--Hb_000497_300 Hb_001352_020 Hb_001352_020 Hb_001789_150--Hb_001352_020 Hb_004480_100 Hb_004480_100 Hb_001789_150--Hb_004480_100 Hb_000185_220 Hb_000185_220 Hb_006059_010--Hb_000185_220 Hb_006059_010--Hb_002660_170 Hb_000109_180 Hb_000109_180 Hb_006059_010--Hb_000109_180 Hb_006059_010--Hb_008748_030 Hb_000297_120 Hb_000297_120 Hb_006059_010--Hb_000297_120 Hb_029243_030 Hb_029243_030 Hb_000574_450--Hb_029243_030 Hb_149985_010 Hb_149985_010 Hb_000574_450--Hb_149985_010 Hb_000487_270 Hb_000487_270 Hb_000574_450--Hb_000487_270 Hb_000574_450--Hb_010515_020 Hb_001500_140 Hb_001500_140 Hb_000574_450--Hb_001500_140 Hb_000025_190 Hb_000025_190 Hb_002660_170--Hb_000025_190 Hb_007218_120 Hb_007218_120 Hb_002660_170--Hb_007218_120 Hb_000060_050 Hb_000060_050 Hb_002660_170--Hb_000060_050 Hb_002477_290 Hb_002477_290 Hb_002660_170--Hb_002477_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.35459 7.24876 5.12426 12.3871 2.97302 4.67482
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.35196 7.02725 8.11847 9.0945 9.43905

CAGE analysis