Hb_000012_320

Information

Type -
Description -
Location Contig12: 404976-408863
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24700g
description POPTRDRAFT_561678; hypothetical protein
nr
ID XP_012077309.1
description PREDICTED: uncharacterized protein LOC105638164 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KGH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07684 PE=4 SV=1
Gene Ontology
ID GO:0044699
description PREDICTED: uncharacterized protein LOC105638164

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06017: 405212-405659 , PASA_asmbl_06018: 405761-406151 , PASA_asmbl_06019: 407178-407734 , PASA_asmbl_06020: 408225-408428
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_320 0.0 - - PREDICTED: uncharacterized protein LOC105638164 [Jatropha curcas]
2 Hb_001240_050 0.1228562753 - - PREDICTED: CSC1-like protein At1g32090 [Jatropha curcas]
3 Hb_002942_140 0.1248117329 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
4 Hb_004545_080 0.1249688098 - - protein with unknown function [Ricinus communis]
5 Hb_001117_080 0.136653517 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
6 Hb_002432_050 0.1375623978 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
7 Hb_001048_100 0.138697706 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
8 Hb_001360_030 0.1390460174 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
9 Hb_027043_010 0.1395239227 - - PREDICTED: glycerophosphodiester phosphodiesterase GDPD4 [Jatropha curcas]
10 Hb_003050_360 0.1396831399 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
11 Hb_000120_300 0.1448908492 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X1 [Eucalyptus grandis]
12 Hb_000088_240 0.1449677972 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
13 Hb_001277_400 0.1466202894 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
14 Hb_112064_010 0.148029354 - - PREDICTED: inositol-phosphate phosphatase [Jatropha curcas]
15 Hb_031385_010 0.1481386531 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
16 Hb_003687_040 0.1512435549 - - PREDICTED: uncharacterized protein LOC105632153 [Jatropha curcas]
17 Hb_004883_020 0.1534142048 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
18 Hb_007575_030 0.1536524411 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
19 Hb_000791_050 0.1538746045 - - PREDICTED: uncharacterized protein LOC105636760 [Jatropha curcas]
20 Hb_000061_310 0.1541751146 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000012_320 Hb_000012_320 Hb_001240_050 Hb_001240_050 Hb_000012_320--Hb_001240_050 Hb_002942_140 Hb_002942_140 Hb_000012_320--Hb_002942_140 Hb_004545_080 Hb_004545_080 Hb_000012_320--Hb_004545_080 Hb_001117_080 Hb_001117_080 Hb_000012_320--Hb_001117_080 Hb_002432_050 Hb_002432_050 Hb_000012_320--Hb_002432_050 Hb_001048_100 Hb_001048_100 Hb_000012_320--Hb_001048_100 Hb_000165_070 Hb_000165_070 Hb_001240_050--Hb_000165_070 Hb_001240_050--Hb_001048_100 Hb_003659_010 Hb_003659_010 Hb_001240_050--Hb_003659_010 Hb_005545_020 Hb_005545_020 Hb_001240_050--Hb_005545_020 Hb_001240_050--Hb_001117_080 Hb_002942_140--Hb_004545_080 Hb_003050_360 Hb_003050_360 Hb_002942_140--Hb_003050_360 Hb_000230_530 Hb_000230_530 Hb_002942_140--Hb_000230_530 Hb_003175_070 Hb_003175_070 Hb_002942_140--Hb_003175_070 Hb_112064_010 Hb_112064_010 Hb_002942_140--Hb_112064_010 Hb_010632_020 Hb_010632_020 Hb_002942_140--Hb_010632_020 Hb_000032_410 Hb_000032_410 Hb_004545_080--Hb_000032_410 Hb_000527_080 Hb_000527_080 Hb_004545_080--Hb_000527_080 Hb_004545_080--Hb_003050_360 Hb_000689_050 Hb_000689_050 Hb_004545_080--Hb_000689_050 Hb_004545_080--Hb_003175_070 Hb_000098_180 Hb_000098_180 Hb_001117_080--Hb_000098_180 Hb_086639_050 Hb_086639_050 Hb_001117_080--Hb_086639_050 Hb_001117_080--Hb_002432_050 Hb_000649_330 Hb_000649_330 Hb_001117_080--Hb_000649_330 Hb_000567_090 Hb_000567_090 Hb_001117_080--Hb_000567_090 Hb_002249_170 Hb_002249_170 Hb_001117_080--Hb_002249_170 Hb_005527_060 Hb_005527_060 Hb_002432_050--Hb_005527_060 Hb_000594_060 Hb_000594_060 Hb_002432_050--Hb_000594_060 Hb_001663_130 Hb_001663_130 Hb_002432_050--Hb_001663_130 Hb_013968_010 Hb_013968_010 Hb_002432_050--Hb_013968_010 Hb_011188_010 Hb_011188_010 Hb_002432_050--Hb_011188_010 Hb_031385_010 Hb_031385_010 Hb_001048_100--Hb_031385_010 Hb_000760_080 Hb_000760_080 Hb_001048_100--Hb_000760_080 Hb_000731_210 Hb_000731_210 Hb_001048_100--Hb_000731_210 Hb_002301_370 Hb_002301_370 Hb_001048_100--Hb_002301_370 Hb_000230_360 Hb_000230_360 Hb_001048_100--Hb_000230_360 Hb_000061_310 Hb_000061_310 Hb_001048_100--Hb_000061_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.894082 2.06197 7.60934 4.40141 0.195781 0.723386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.138135 0.217386 0.94513 3.88766 3.7864

CAGE analysis