Hb_000012_330

Information

Type -
Description -
Location Contig12: 427321-431379
Sequence    

Annotation

kegg
ID rcu:RCOM_0798100
description pollen specific protein sf21, putative
nr
ID XP_002516460.1
description pollen specific protein sf21, putative [Ricinus communis]
swissprot
ID O23969
description Pollen-specific protein SF21 OS=Helianthus annuus GN=SF21 PE=2 SV=1
trembl
ID B9RRU1
description Pollen specific protein sf21, putative OS=Ricinus communis GN=RCOM_0798100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06023: 427345-431273 , PASA_asmbl_06024: 429946-430272
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_330 0.0 - - pollen specific protein sf21, putative [Ricinus communis]
2 Hb_000622_050 0.0541779045 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012098_160 0.0873880204 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
4 Hb_003835_080 0.089198894 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
5 Hb_012484_050 0.0910219907 - - PREDICTED: kinesin KP1 [Jatropha curcas]
6 Hb_005725_240 0.0964516126 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
7 Hb_001486_280 0.1040621153 - - hypothetical protein RCOM_1321910 [Ricinus communis]
8 Hb_007163_100 0.1043851731 - - BnaC03g52280D [Brassica napus]
9 Hb_002066_110 0.1104178024 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
10 Hb_000904_120 0.1105648621 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000270_380 0.111958216 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
12 Hb_000976_400 0.1128786607 - - synaptotagmin, putative [Ricinus communis]
13 Hb_005976_110 0.1129481942 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
14 Hb_005694_160 0.1145088065 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004531_170 0.1145184879 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
16 Hb_001951_080 0.1150014186 - - O-acetyltransferase, putative [Ricinus communis]
17 Hb_004696_010 0.1151696668 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
18 Hb_000680_170 0.1157533133 - - hypothetical protein JCGZ_24789 [Jatropha curcas]
19 Hb_001357_050 0.1159890386 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12-like [Jatropha curcas]
20 Hb_084303_010 0.1172675864 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000012_330 Hb_000012_330 Hb_000622_050 Hb_000622_050 Hb_000012_330--Hb_000622_050 Hb_012098_160 Hb_012098_160 Hb_000012_330--Hb_012098_160 Hb_003835_080 Hb_003835_080 Hb_000012_330--Hb_003835_080 Hb_012484_050 Hb_012484_050 Hb_000012_330--Hb_012484_050 Hb_005725_240 Hb_005725_240 Hb_000012_330--Hb_005725_240 Hb_001486_280 Hb_001486_280 Hb_000012_330--Hb_001486_280 Hb_000976_400 Hb_000976_400 Hb_000622_050--Hb_000976_400 Hb_004220_010 Hb_004220_010 Hb_000622_050--Hb_004220_010 Hb_000622_050--Hb_012098_160 Hb_000622_050--Hb_005725_240 Hb_004531_170 Hb_004531_170 Hb_000622_050--Hb_004531_170 Hb_000270_380 Hb_000270_380 Hb_012098_160--Hb_000270_380 Hb_007163_100 Hb_007163_100 Hb_012098_160--Hb_007163_100 Hb_009023_010 Hb_009023_010 Hb_012098_160--Hb_009023_010 Hb_012098_160--Hb_001486_280 Hb_000904_120 Hb_000904_120 Hb_012098_160--Hb_000904_120 Hb_015561_010 Hb_015561_010 Hb_012098_160--Hb_015561_010 Hb_002572_040 Hb_002572_040 Hb_003835_080--Hb_002572_040 Hb_004696_010 Hb_004696_010 Hb_003835_080--Hb_004696_010 Hb_000977_020 Hb_000977_020 Hb_003835_080--Hb_000977_020 Hb_003835_080--Hb_012484_050 Hb_003835_080--Hb_000622_050 Hb_001951_080 Hb_001951_080 Hb_012484_050--Hb_001951_080 Hb_012484_050--Hb_007163_100 Hb_012484_050--Hb_012098_160 Hb_001512_130 Hb_001512_130 Hb_012484_050--Hb_001512_130 Hb_012484_050--Hb_001486_280 Hb_005725_240--Hb_000976_400 Hb_000212_410 Hb_000212_410 Hb_005725_240--Hb_000212_410 Hb_084303_010 Hb_084303_010 Hb_005725_240--Hb_084303_010 Hb_000816_240 Hb_000816_240 Hb_005725_240--Hb_000816_240 Hb_001486_280--Hb_000270_380 Hb_001486_280--Hb_009023_010 Hb_002485_010 Hb_002485_010 Hb_001486_280--Hb_002485_010 Hb_001486_280--Hb_000904_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.54536 3.68379 18.8346 25.5602 0.40226 0.159665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.12238 0.168491 0.0452536 1.79623 22.9793

CAGE analysis