Hb_000012_340

Information

Type -
Description -
Location Contig12: 431744-433112
Sequence    

Annotation

kegg
ID pop:POPTR_0018s05070g
description POPTRDRAFT_736883; hypothetical protein
nr
ID XP_012077304.1
description PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
swissprot
ID Q9FZ62
description Inorganic pyrophosphatase 2 OS=Arabidopsis thaliana GN=At1g17710 PE=2 SV=1
trembl
ID A0A067KD09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07682 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06025: 431661-433094
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_340 0.0 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
2 Hb_000816_170 0.0673104958 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
3 Hb_001401_130 0.0690484566 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
4 Hb_001123_080 0.0705652925 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005539_330 0.0710998472 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
6 Hb_003607_040 0.0711198723 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
7 Hb_002186_190 0.0724950484 - - -
8 Hb_000083_260 0.0743264578 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002215_020 0.07659168 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
10 Hb_006889_010 0.0778774082 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
11 Hb_014881_020 0.0781627273 - - Protein P21, putative [Ricinus communis]
12 Hb_000429_070 0.0812239724 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
13 Hb_103942_020 0.0829713643 - - unknown [Zea mays]
14 Hb_001157_120 0.0842489829 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
15 Hb_001454_030 0.0843832017 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
16 Hb_003528_090 0.0867372545 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
17 Hb_005396_020 0.0868308394 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
18 Hb_001232_170 0.089043717 - - sulfate transporter, putative [Ricinus communis]
19 Hb_006570_170 0.0901554217 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
20 Hb_012180_070 0.0918357021 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000012_340 Hb_000012_340 Hb_000816_170 Hb_000816_170 Hb_000012_340--Hb_000816_170 Hb_001401_130 Hb_001401_130 Hb_000012_340--Hb_001401_130 Hb_001123_080 Hb_001123_080 Hb_000012_340--Hb_001123_080 Hb_005539_330 Hb_005539_330 Hb_000012_340--Hb_005539_330 Hb_003607_040 Hb_003607_040 Hb_000012_340--Hb_003607_040 Hb_002186_190 Hb_002186_190 Hb_000012_340--Hb_002186_190 Hb_000358_070 Hb_000358_070 Hb_000816_170--Hb_000358_070 Hb_001232_170 Hb_001232_170 Hb_000816_170--Hb_001232_170 Hb_000243_240 Hb_000243_240 Hb_000816_170--Hb_000243_240 Hb_001343_060 Hb_001343_060 Hb_000816_170--Hb_001343_060 Hb_000201_060 Hb_000201_060 Hb_000816_170--Hb_000201_060 Hb_000429_070 Hb_000429_070 Hb_001401_130--Hb_000429_070 Hb_001386_070 Hb_001386_070 Hb_001401_130--Hb_001386_070 Hb_012180_070 Hb_012180_070 Hb_001401_130--Hb_012180_070 Hb_003528_090 Hb_003528_090 Hb_001401_130--Hb_003528_090 Hb_001401_130--Hb_002186_190 Hb_006018_020 Hb_006018_020 Hb_001123_080--Hb_006018_020 Hb_014881_020 Hb_014881_020 Hb_001123_080--Hb_014881_020 Hb_001123_080--Hb_001232_170 Hb_001123_080--Hb_000201_060 Hb_000754_010 Hb_000754_010 Hb_001123_080--Hb_000754_010 Hb_006889_010 Hb_006889_010 Hb_005539_330--Hb_006889_010 Hb_085158_010 Hb_085158_010 Hb_005539_330--Hb_085158_010 Hb_005539_330--Hb_000429_070 Hb_000431_050 Hb_000431_050 Hb_005539_330--Hb_000431_050 Hb_006603_010 Hb_006603_010 Hb_005539_330--Hb_006603_010 Hb_002215_020 Hb_002215_020 Hb_003607_040--Hb_002215_020 Hb_116679_010 Hb_116679_010 Hb_003607_040--Hb_116679_010 Hb_003607_040--Hb_000358_070 Hb_003607_040--Hb_000816_170 Hb_029508_050 Hb_029508_050 Hb_003607_040--Hb_029508_050 Hb_002186_190--Hb_000429_070 Hb_000637_090 Hb_000637_090 Hb_002186_190--Hb_000637_090 Hb_007677_010 Hb_007677_010 Hb_002186_190--Hb_007677_010 Hb_009470_010 Hb_009470_010 Hb_002186_190--Hb_009470_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.197734 0.188691 8.68638 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0323436 0.411059

CAGE analysis