Hb_000012_370

Information

Type -
Description -
Location Contig12: 469180-469746
Sequence    

Annotation

kegg
ID rcu:RCOM_0797770
description hypothetical protein
nr
ID XP_002516457.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O80992
description Abscisic acid receptor PYL2 OS=Arabidopsis thaliana GN=PYL2 PE=1 SV=1
trembl
ID B9RRT8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0797770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06028: 469045-469454
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_370 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001191_060 0.0533825644 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
3 Hb_176135_010 0.0536506564 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
4 Hb_008748_050 0.0537768086 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
5 Hb_086022_020 0.0661341091 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
6 Hb_000185_010 0.066769226 - - Alliin lyase precursor, putative [Ricinus communis]
7 Hb_000320_370 0.0669046976 - - PREDICTED: ATP synthase gamma chain, chloroplastic [Jatropha curcas]
8 Hb_001856_240 0.0684069218 transcription factor TF Family: TCP Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]
9 Hb_003186_030 0.0692819525 transcription factor TF Family: MYB hypothetical protein POPTR_0012s05720g [Populus trichocarpa]
10 Hb_001269_480 0.0695291487 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
11 Hb_001310_020 0.0706452246 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]
12 Hb_002809_030 0.0728909597 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002785_040 0.0741497946 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
14 Hb_000251_160 0.0746464301 - - chlorophyll A/B binding protein, putative [Ricinus communis]
15 Hb_004129_170 0.0768887948 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
16 Hb_003090_050 0.0779498241 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
17 Hb_027380_080 0.0780865216 - - hypothetical protein JCGZ_04649 [Jatropha curcas]
18 Hb_003847_070 0.0800585573 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
19 Hb_001348_160 0.0807191994 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
20 Hb_000482_030 0.081862107 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000012_370 Hb_000012_370 Hb_001191_060 Hb_001191_060 Hb_000012_370--Hb_001191_060 Hb_176135_010 Hb_176135_010 Hb_000012_370--Hb_176135_010 Hb_008748_050 Hb_008748_050 Hb_000012_370--Hb_008748_050 Hb_086022_020 Hb_086022_020 Hb_000012_370--Hb_086022_020 Hb_000185_010 Hb_000185_010 Hb_000012_370--Hb_000185_010 Hb_000320_370 Hb_000320_370 Hb_000012_370--Hb_000320_370 Hb_001310_020 Hb_001310_020 Hb_001191_060--Hb_001310_020 Hb_001348_160 Hb_001348_160 Hb_001191_060--Hb_001348_160 Hb_001269_480 Hb_001269_480 Hb_001191_060--Hb_001269_480 Hb_002818_130 Hb_002818_130 Hb_001191_060--Hb_002818_130 Hb_003033_020 Hb_003033_020 Hb_001191_060--Hb_003033_020 Hb_176135_010--Hb_008748_050 Hb_176135_010--Hb_086022_020 Hb_003847_070 Hb_003847_070 Hb_176135_010--Hb_003847_070 Hb_002785_040 Hb_002785_040 Hb_176135_010--Hb_002785_040 Hb_000251_160 Hb_000251_160 Hb_176135_010--Hb_000251_160 Hb_008748_050--Hb_086022_020 Hb_003090_050 Hb_003090_050 Hb_008748_050--Hb_003090_050 Hb_000111_460 Hb_000111_460 Hb_008748_050--Hb_000111_460 Hb_000923_030 Hb_000923_030 Hb_008748_050--Hb_000923_030 Hb_086022_020--Hb_000251_160 Hb_004129_170 Hb_004129_170 Hb_086022_020--Hb_004129_170 Hb_086022_020--Hb_002785_040 Hb_003747_090 Hb_003747_090 Hb_086022_020--Hb_003747_090 Hb_005375_090 Hb_005375_090 Hb_086022_020--Hb_005375_090 Hb_000069_760 Hb_000069_760 Hb_000185_010--Hb_000069_760 Hb_000008_160 Hb_000008_160 Hb_000185_010--Hb_000008_160 Hb_087599_010 Hb_087599_010 Hb_000185_010--Hb_087599_010 Hb_156093_010 Hb_156093_010 Hb_000185_010--Hb_156093_010 Hb_006132_080 Hb_006132_080 Hb_000185_010--Hb_006132_080 Hb_002809_030 Hb_002809_030 Hb_000320_370--Hb_002809_030 Hb_000320_370--Hb_002785_040 Hb_000320_370--Hb_086022_020 Hb_000352_230 Hb_000352_230 Hb_000320_370--Hb_000352_230 Hb_000320_370--Hb_008748_050 Hb_000589_340 Hb_000589_340 Hb_000320_370--Hb_000589_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0804004 2.27577 0.965065 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.071135 5.63213

CAGE analysis