Hb_000012_460

Information

Type -
Description -
Location Contig12: 644991-646291
Sequence    

Annotation

kegg
ID pop:POPTR_0018s05130g
description POPTRDRAFT_809030; hypothetical protein
nr
ID ABK95981.1
description unknown [Populus trichocarpa]
swissprot
ID F4ITL6
description Protein REVERSION-TO-ETHYLENE SENSITIVITY1 OS=Arabidopsis thaliana GN=RTE1 PE=1 SV=1
trembl
ID A9PHX8
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0010105
description protein reversion-to-ethylene sensitivity1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_460 0.0 - - unknown [Populus trichocarpa]
2 Hb_007426_160 0.1851960536 - - -
3 Hb_086077_020 0.1986059389 - - hypothetical protein PHAVU_001G054900g [Phaseolus vulgaris]
4 Hb_000772_040 0.2122744295 - - PREDICTED: uncharacterized protein LOC105036273 [Elaeis guineensis]
5 Hb_000932_100 0.2211958159 - - -
6 Hb_001006_260 0.2301230562 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
7 Hb_004448_020 0.2321836315 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
8 Hb_004440_080 0.2372446917 - - PREDICTED: syntaxin-112 [Populus euphratica]
9 Hb_000630_040 0.2403906045 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
10 Hb_000387_100 0.2485830726 - - -
11 Hb_061802_010 0.2522503585 - - hypothetical protein VITISV_011986 [Vitis vinifera]
12 Hb_150379_010 0.2541104244 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
13 Hb_002551_020 0.2566858973 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
14 Hb_001481_180 0.2567938035 - - plasma membrane H+-ATPase [Hevea brasiliensis]
15 Hb_011671_220 0.2602767635 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000052_020 0.261919513 desease resistance Gene Name: ABC_tran PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
17 Hb_002054_010 0.2635009915 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
18 Hb_003786_020 0.2681515371 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
19 Hb_003081_030 0.2692713934 - - PREDICTED: uncharacterized protein LOC101256381 [Solanum lycopersicum]
20 Hb_022092_090 0.2693254273 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]

Gene co-expression network

sample Hb_000012_460 Hb_000012_460 Hb_007426_160 Hb_007426_160 Hb_000012_460--Hb_007426_160 Hb_086077_020 Hb_086077_020 Hb_000012_460--Hb_086077_020 Hb_000772_040 Hb_000772_040 Hb_000012_460--Hb_000772_040 Hb_000932_100 Hb_000932_100 Hb_000012_460--Hb_000932_100 Hb_001006_260 Hb_001006_260 Hb_000012_460--Hb_001006_260 Hb_004448_020 Hb_004448_020 Hb_000012_460--Hb_004448_020 Hb_001439_060 Hb_001439_060 Hb_007426_160--Hb_001439_060 Hb_007426_160--Hb_000932_100 Hb_000160_320 Hb_000160_320 Hb_007426_160--Hb_000160_320 Hb_000630_040 Hb_000630_040 Hb_007426_160--Hb_000630_040 Hb_150379_010 Hb_150379_010 Hb_007426_160--Hb_150379_010 Hb_004440_080 Hb_004440_080 Hb_086077_020--Hb_004440_080 Hb_000258_340 Hb_000258_340 Hb_086077_020--Hb_000258_340 Hb_010977_010 Hb_010977_010 Hb_086077_020--Hb_010977_010 Hb_086077_020--Hb_000772_040 Hb_133820_010 Hb_133820_010 Hb_086077_020--Hb_133820_010 Hb_000399_010 Hb_000399_010 Hb_000772_040--Hb_000399_010 Hb_001703_120 Hb_001703_120 Hb_000772_040--Hb_001703_120 Hb_000865_060 Hb_000865_060 Hb_000772_040--Hb_000865_060 Hb_001294_010 Hb_001294_010 Hb_000772_040--Hb_001294_010 Hb_000772_040--Hb_000160_320 Hb_005228_110 Hb_005228_110 Hb_000932_100--Hb_005228_110 Hb_020665_010 Hb_020665_010 Hb_000932_100--Hb_020665_010 Hb_000062_140 Hb_000062_140 Hb_000932_100--Hb_000062_140 Hb_002025_200 Hb_002025_200 Hb_000932_100--Hb_002025_200 Hb_003206_020 Hb_003206_020 Hb_000932_100--Hb_003206_020 Hb_002471_080 Hb_002471_080 Hb_001006_260--Hb_002471_080 Hb_000046_290 Hb_000046_290 Hb_001006_260--Hb_000046_290 Hb_001173_040 Hb_001173_040 Hb_001006_260--Hb_001173_040 Hb_010436_060 Hb_010436_060 Hb_001006_260--Hb_010436_060 Hb_020000_010 Hb_020000_010 Hb_001006_260--Hb_020000_010 Hb_001575_020 Hb_001575_020 Hb_001006_260--Hb_001575_020 Hb_000491_090 Hb_000491_090 Hb_004448_020--Hb_000491_090 Hb_011671_220 Hb_011671_220 Hb_004448_020--Hb_011671_220 Hb_000963_190 Hb_000963_190 Hb_004448_020--Hb_000963_190 Hb_015057_010 Hb_015057_010 Hb_004448_020--Hb_015057_010 Hb_005656_050 Hb_005656_050 Hb_004448_020--Hb_005656_050 Hb_009558_020 Hb_009558_020 Hb_004448_020--Hb_009558_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.209658 0 0 0 0.110687 0.422844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.413502 0.216561 0.365646 0.0901667 0.40338

CAGE analysis