Hb_000014_040

Information

Type -
Description -
Location Contig14: 105993-113701
Sequence    

Annotation

kegg
ID rcu:RCOM_0977300
description hypothetical protein
nr
ID XP_002521262.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S5J3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0977300 PE=4 SV=1
Gene Ontology
ID GO:0005768
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10797: 107645-109472
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000014_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002928_090 0.066888644 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]
3 Hb_001051_050 0.0761897993 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000390_050 0.0833682029 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
5 Hb_170138_010 0.0852666223 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000399_060 0.0933907017 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
7 Hb_000684_210 0.0937583727 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
8 Hb_001157_230 0.0978461606 - - Protein AFR, putative [Ricinus communis]
9 Hb_007765_040 0.0986271445 - - Cytosolic enolase isoform 3 [Theobroma cacao]
10 Hb_001104_130 0.1005033722 - - C-14 sterol reductase, putative [Ricinus communis]
11 Hb_001242_120 0.100803933 - - PREDICTED: carboxypeptidase D [Jatropha curcas]
12 Hb_002226_080 0.1019920739 - - PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]
13 Hb_003206_110 0.1026095359 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
14 Hb_000056_130 0.1047411722 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
15 Hb_002902_130 0.1053579815 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
16 Hb_000359_210 0.1068466246 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001491_030 0.1074259114 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
18 Hb_000200_350 0.1078873041 - - PREDICTED: uncharacterized protein LOC105636929 [Jatropha curcas]
19 Hb_000417_390 0.1095614268 - - PREDICTED: ER lumen protein-retaining receptor A [Jatropha curcas]
20 Hb_000638_070 0.1110808683 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]

Gene co-expression network

sample Hb_000014_040 Hb_000014_040 Hb_002928_090 Hb_002928_090 Hb_000014_040--Hb_002928_090 Hb_001051_050 Hb_001051_050 Hb_000014_040--Hb_001051_050 Hb_000390_050 Hb_000390_050 Hb_000014_040--Hb_000390_050 Hb_170138_010 Hb_170138_010 Hb_000014_040--Hb_170138_010 Hb_000399_060 Hb_000399_060 Hb_000014_040--Hb_000399_060 Hb_000684_210 Hb_000684_210 Hb_000014_040--Hb_000684_210 Hb_001242_120 Hb_001242_120 Hb_002928_090--Hb_001242_120 Hb_002928_090--Hb_001051_050 Hb_005725_130 Hb_005725_130 Hb_002928_090--Hb_005725_130 Hb_002928_090--Hb_000390_050 Hb_009569_040 Hb_009569_040 Hb_002928_090--Hb_009569_040 Hb_001051_050--Hb_001242_120 Hb_000116_190 Hb_000116_190 Hb_001051_050--Hb_000116_190 Hb_000645_280 Hb_000645_280 Hb_001051_050--Hb_000645_280 Hb_007821_030 Hb_007821_030 Hb_001051_050--Hb_007821_030 Hb_007765_040 Hb_007765_040 Hb_000390_050--Hb_007765_040 Hb_000417_390 Hb_000417_390 Hb_000390_050--Hb_000417_390 Hb_003097_140 Hb_003097_140 Hb_000390_050--Hb_003097_140 Hb_007416_210 Hb_007416_210 Hb_000390_050--Hb_007416_210 Hb_002902_130 Hb_002902_130 Hb_000390_050--Hb_002902_130 Hb_003206_110 Hb_003206_110 Hb_170138_010--Hb_003206_110 Hb_001195_400 Hb_001195_400 Hb_170138_010--Hb_001195_400 Hb_000185_220 Hb_000185_220 Hb_170138_010--Hb_000185_220 Hb_004046_030 Hb_004046_030 Hb_170138_010--Hb_004046_030 Hb_000359_210 Hb_000359_210 Hb_170138_010--Hb_000359_210 Hb_170138_010--Hb_000684_210 Hb_000320_340 Hb_000320_340 Hb_000399_060--Hb_000320_340 Hb_011926_040 Hb_011926_040 Hb_000399_060--Hb_011926_040 Hb_000665_180 Hb_000665_180 Hb_000399_060--Hb_000665_180 Hb_001157_230 Hb_001157_230 Hb_000399_060--Hb_001157_230 Hb_008406_180 Hb_008406_180 Hb_000399_060--Hb_008406_180 Hb_000684_210--Hb_000645_280 Hb_000684_210--Hb_000359_210 Hb_001662_100 Hb_001662_100 Hb_000684_210--Hb_001662_100 Hb_003106_190 Hb_003106_190 Hb_000684_210--Hb_003106_190 Hb_000684_210--Hb_009569_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.93422 1.25683 3.49532 8.08149 3.10651 3.14232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.41343 2.40931 2.39185 4.07494 8.03715

CAGE analysis