Hb_000014_130

Information

Type -
Description -
Location Contig14: 271080-272506
Sequence    

Annotation

kegg
ID pda:103699727
description uncharacterized LOC103699727
nr
ID XP_009768808.1
description PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID C7J7N6
description Os10g0357350 protein OS=Oryza sativa subsp. japonica GN=Os10g0357350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000014_130 0.0 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
2 Hb_041237_010 0.1416625633 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007978_020 0.1971785197 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
4 Hb_003772_020 0.208548654 - - PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]
5 Hb_002904_090 0.2114769849 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71420-like [Vitis vinifera]
6 Hb_032018_010 0.2155676138 - - PREDICTED: uncharacterized protein LOC105778873 [Gossypium raimondii]
7 Hb_003398_010 0.2221857073 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
8 Hb_002837_090 0.223280194 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
9 Hb_000062_500 0.232347044 - - PREDICTED: urease-like [Zea mays]
10 Hb_007904_190 0.2359122693 - - -
11 Hb_000298_080 0.2454350773 - - -
12 Hb_000317_090 0.2475973321 - - hypothetical protein RCOM_1176360 [Ricinus communis]
13 Hb_003859_010 0.2488198507 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
14 Hb_011794_020 0.2523588171 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_159307_010 0.2536118838 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
16 Hb_004534_020 0.2542778881 - - PREDICTED: cysteine proteinase inhibitor B [Jatropha curcas]
17 Hb_001158_180 0.254465047 - - -
18 Hb_002249_110 0.2615845233 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
19 Hb_000307_250 0.263123574 - - PREDICTED: probable nucleoredoxin 2 [Jatropha curcas]
20 Hb_003609_010 0.2660449752 - - -

Gene co-expression network

sample Hb_000014_130 Hb_000014_130 Hb_041237_010 Hb_041237_010 Hb_000014_130--Hb_041237_010 Hb_007978_020 Hb_007978_020 Hb_000014_130--Hb_007978_020 Hb_003772_020 Hb_003772_020 Hb_000014_130--Hb_003772_020 Hb_002904_090 Hb_002904_090 Hb_000014_130--Hb_002904_090 Hb_032018_010 Hb_032018_010 Hb_000014_130--Hb_032018_010 Hb_003398_010 Hb_003398_010 Hb_000014_130--Hb_003398_010 Hb_041237_010--Hb_003398_010 Hb_000617_040 Hb_000617_040 Hb_041237_010--Hb_000617_040 Hb_000413_170 Hb_000413_170 Hb_041237_010--Hb_000413_170 Hb_041237_010--Hb_007978_020 Hb_003299_080 Hb_003299_080 Hb_041237_010--Hb_003299_080 Hb_181975_010 Hb_181975_010 Hb_007978_020--Hb_181975_010 Hb_000574_150 Hb_000574_150 Hb_007978_020--Hb_000574_150 Hb_007978_020--Hb_000617_040 Hb_007978_020--Hb_003398_010 Hb_003772_020--Hb_032018_010 Hb_000062_500 Hb_000062_500 Hb_003772_020--Hb_000062_500 Hb_003772_020--Hb_007978_020 Hb_003772_020--Hb_041237_010 Hb_010447_020 Hb_010447_020 Hb_003772_020--Hb_010447_020 Hb_019282_010 Hb_019282_010 Hb_002904_090--Hb_019282_010 Hb_001427_180 Hb_001427_180 Hb_002904_090--Hb_001427_180 Hb_176117_010 Hb_176117_010 Hb_002904_090--Hb_176117_010 Hb_000331_500 Hb_000331_500 Hb_002904_090--Hb_000331_500 Hb_002904_090--Hb_041237_010 Hb_032018_010--Hb_000062_500 Hb_002837_090 Hb_002837_090 Hb_032018_010--Hb_002837_090 Hb_005203_050 Hb_005203_050 Hb_032018_010--Hb_005203_050 Hb_000317_090 Hb_000317_090 Hb_032018_010--Hb_000317_090 Hb_003398_010--Hb_000617_040 Hb_004631_160 Hb_004631_160 Hb_003398_010--Hb_004631_160 Hb_003398_010--Hb_003299_080 Hb_000212_130 Hb_000212_130 Hb_003398_010--Hb_000212_130 Hb_031089_030 Hb_031089_030 Hb_003398_010--Hb_031089_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.633371 0.620357 0.071208 0.0155308 0.36166 1.44459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0852195 0.067033 0 0 0

CAGE analysis