Hb_000014_150

Information

Type -
Description -
Location Contig14: 316816-326238
Sequence    

Annotation

kegg
ID rcu:RCOM_0289620
description cysteinyl-tRNA synthetase, putative (EC:6.1.1.16)
nr
ID XP_012082122.1
description PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
swissprot
ID Q39ZL8
description Cysteine--tRNA ligase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=cysS PE=3 SV=1
trembl
ID A0A067JUE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19596 PE=3 SV=1
Gene Ontology
ID GO:0005737
description cysteine--trna cytoplasmic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000014_150 0.0 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
2 Hb_007192_080 0.0839844626 - - PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X2 [Jatropha curcas]
3 Hb_001866_110 0.0921915047 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
4 Hb_000608_030 0.0981723136 - - hypothetical protein JCGZ_18019 [Jatropha curcas]
5 Hb_004117_130 0.0986270104 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
6 Hb_001623_510 0.0995527245 - - transporter, putative [Ricinus communis]
7 Hb_000384_090 0.0998766603 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
8 Hb_004072_020 0.1053434623 - - PREDICTED: uncharacterized protein LOC105635274 [Jatropha curcas]
9 Hb_144598_030 0.1063371527 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
10 Hb_003912_090 0.1081476843 - - peptidyl-tRNA hydrolase, putative [Ricinus communis]
11 Hb_001019_060 0.11074196 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
12 Hb_005489_110 0.1117945075 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
13 Hb_000889_020 0.1118612121 - - ribosome biogenesis protein brix, putative [Ricinus communis]
14 Hb_009117_030 0.1132187733 - - PREDICTED: histidine protein methyltransferase 1 homolog isoform X2 [Jatropha curcas]
15 Hb_007426_030 0.1138356047 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]
16 Hb_000373_240 0.1139347237 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
17 Hb_000933_090 0.1155093583 - - PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
18 Hb_000103_180 0.1158991231 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
19 Hb_011794_060 0.1161191924 - - PREDICTED: beta-amylase 2, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000179_020 0.1161793382 - - amidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000014_150 Hb_000014_150 Hb_007192_080 Hb_007192_080 Hb_000014_150--Hb_007192_080 Hb_001866_110 Hb_001866_110 Hb_000014_150--Hb_001866_110 Hb_000608_030 Hb_000608_030 Hb_000014_150--Hb_000608_030 Hb_004117_130 Hb_004117_130 Hb_000014_150--Hb_004117_130 Hb_001623_510 Hb_001623_510 Hb_000014_150--Hb_001623_510 Hb_000384_090 Hb_000384_090 Hb_000014_150--Hb_000384_090 Hb_003195_060 Hb_003195_060 Hb_007192_080--Hb_003195_060 Hb_007192_080--Hb_001866_110 Hb_009535_020 Hb_009535_020 Hb_007192_080--Hb_009535_020 Hb_008511_050 Hb_008511_050 Hb_007192_080--Hb_008511_050 Hb_002200_130 Hb_002200_130 Hb_007192_080--Hb_002200_130 Hb_000429_120 Hb_000429_120 Hb_001866_110--Hb_000429_120 Hb_005977_090 Hb_005977_090 Hb_001866_110--Hb_005977_090 Hb_000179_020 Hb_000179_020 Hb_001866_110--Hb_000179_020 Hb_002174_060 Hb_002174_060 Hb_001866_110--Hb_002174_060 Hb_003428_070 Hb_003428_070 Hb_001866_110--Hb_003428_070 Hb_000889_020 Hb_000889_020 Hb_001866_110--Hb_000889_020 Hb_000608_030--Hb_000384_090 Hb_003005_020 Hb_003005_020 Hb_000608_030--Hb_003005_020 Hb_000815_210 Hb_000815_210 Hb_000608_030--Hb_000815_210 Hb_003406_010 Hb_003406_010 Hb_000608_030--Hb_003406_010 Hb_000943_070 Hb_000943_070 Hb_000608_030--Hb_000943_070 Hb_003120_060 Hb_003120_060 Hb_000608_030--Hb_003120_060 Hb_002716_130 Hb_002716_130 Hb_004117_130--Hb_002716_130 Hb_020719_030 Hb_020719_030 Hb_004117_130--Hb_020719_030 Hb_000260_170 Hb_000260_170 Hb_004117_130--Hb_000260_170 Hb_000933_090 Hb_000933_090 Hb_004117_130--Hb_000933_090 Hb_007044_080 Hb_007044_080 Hb_004117_130--Hb_007044_080 Hb_000023_220 Hb_000023_220 Hb_004117_130--Hb_000023_220 Hb_005489_110 Hb_005489_110 Hb_001623_510--Hb_005489_110 Hb_001019_060 Hb_001019_060 Hb_001623_510--Hb_001019_060 Hb_007426_030 Hb_007426_030 Hb_001623_510--Hb_007426_030 Hb_001266_080 Hb_001266_080 Hb_001623_510--Hb_001266_080 Hb_034271_030 Hb_034271_030 Hb_001623_510--Hb_034271_030 Hb_000384_090--Hb_003005_020 Hb_000384_090--Hb_003120_060 Hb_063134_010 Hb_063134_010 Hb_000384_090--Hb_063134_010 Hb_002609_110 Hb_002609_110 Hb_000384_090--Hb_002609_110 Hb_000384_090--Hb_003195_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.84326 4.5955 3.78991 8.13636 18.2313 25.5962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.1714 10.2656 11.2468 6.93213 10.5892

CAGE analysis