Hb_000015_010

Information

Type -
Description -
Location Contig15: 4309-7476
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000015_010 0.0 - - -
2 Hb_004374_010 0.0718637493 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
3 Hb_000284_200 0.0853812086 - - -
4 Hb_002044_090 0.086836634 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
5 Hb_000188_190 0.0868652679 - - -
6 Hb_000062_230 0.0943339696 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
7 Hb_160818_010 0.0945913265 - - -
8 Hb_000088_180 0.0968512674 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
9 Hb_000320_440 0.0988321718 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
10 Hb_000491_080 0.0997820132 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
11 Hb_009615_110 0.0999366846 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
12 Hb_001776_080 0.1014904179 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
13 Hb_000179_250 0.1029953209 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
14 Hb_002681_140 0.1052888292 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
15 Hb_001437_300 0.106441039 - - -
16 Hb_005015_010 0.1064622574 - - PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
17 Hb_000950_080 0.1070803866 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
18 Hb_005389_140 0.109110612 - - Xyloglucan endotransglucosylase/hydrolase protein 14 precursor, putative [Ricinus communis]
19 Hb_002284_300 0.1091886299 - - -
20 Hb_001016_060 0.1096824203 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000015_010 Hb_000015_010 Hb_004374_010 Hb_004374_010 Hb_000015_010--Hb_004374_010 Hb_000284_200 Hb_000284_200 Hb_000015_010--Hb_000284_200 Hb_002044_090 Hb_002044_090 Hb_000015_010--Hb_002044_090 Hb_000188_190 Hb_000188_190 Hb_000015_010--Hb_000188_190 Hb_000062_230 Hb_000062_230 Hb_000015_010--Hb_000062_230 Hb_160818_010 Hb_160818_010 Hb_000015_010--Hb_160818_010 Hb_001956_120 Hb_001956_120 Hb_004374_010--Hb_001956_120 Hb_004374_010--Hb_000062_230 Hb_017098_030 Hb_017098_030 Hb_004374_010--Hb_017098_030 Hb_004374_010--Hb_002044_090 Hb_011537_040 Hb_011537_040 Hb_004374_010--Hb_011537_040 Hb_002681_140 Hb_002681_140 Hb_000284_200--Hb_002681_140 Hb_000847_070 Hb_000847_070 Hb_000284_200--Hb_000847_070 Hb_004502_030 Hb_004502_030 Hb_000284_200--Hb_004502_030 Hb_006637_060 Hb_006637_060 Hb_000284_200--Hb_006637_060 Hb_001514_200 Hb_001514_200 Hb_000284_200--Hb_001514_200 Hb_002044_090--Hb_000062_230 Hb_005754_020 Hb_005754_020 Hb_002044_090--Hb_005754_020 Hb_002377_040 Hb_002377_040 Hb_002044_090--Hb_002377_040 Hb_000176_140 Hb_000176_140 Hb_002044_090--Hb_000176_140 Hb_000179_250 Hb_000179_250 Hb_002044_090--Hb_000179_250 Hb_003352_050 Hb_003352_050 Hb_002044_090--Hb_003352_050 Hb_005015_010 Hb_005015_010 Hb_000188_190--Hb_005015_010 Hb_000188_190--Hb_004374_010 Hb_005714_040 Hb_005714_040 Hb_000188_190--Hb_005714_040 Hb_004032_460 Hb_004032_460 Hb_000188_190--Hb_004032_460 Hb_002728_020 Hb_002728_020 Hb_000188_190--Hb_002728_020 Hb_000062_230--Hb_002377_040 Hb_000062_230--Hb_005754_020 Hb_000062_230--Hb_003352_050 Hb_004813_010 Hb_004813_010 Hb_000062_230--Hb_004813_010 Hb_000491_080 Hb_000491_080 Hb_160818_010--Hb_000491_080 Hb_002169_010 Hb_002169_010 Hb_160818_010--Hb_002169_010 Hb_001776_080 Hb_001776_080 Hb_160818_010--Hb_001776_080 Hb_000320_440 Hb_000320_440 Hb_160818_010--Hb_000320_440 Hb_011496_010 Hb_011496_010 Hb_160818_010--Hb_011496_010 Hb_005314_010 Hb_005314_010 Hb_160818_010--Hb_005314_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.80891 1.41063 0.763109 0.134698 6.98793 5.67129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.87573 2.47559 2.03908 0.929712 0.878951

CAGE analysis