Hb_000015_030

Information

Type -
Description -
Location Contig15: 19703-23111
Sequence    

Annotation

kegg
ID pop:POPTR_0010s21510g
description POPTRDRAFT_814194; hypothetical protein
nr
ID XP_012089573.1
description PREDICTED: THO complex subunit 4B-like [Jatropha curcas]
swissprot
ID Q8L719
description THO complex subunit 4B OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1
trembl
ID A0A067L956
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01496 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12487: 19877-22731 , PASA_asmbl_12488: 20016-22946 , PASA_asmbl_12490: 22325-22458
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000015_030 0.0 - - PREDICTED: THO complex subunit 4B-like [Jatropha curcas]
2 Hb_001623_060 0.0930439731 - - potassium channel beta, putative [Ricinus communis]
3 Hb_005914_010 0.0955875298 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
4 Hb_006698_030 0.1001810225 - - PREDICTED: uncharacterized protein LOC105633969 [Jatropha curcas]
5 Hb_011671_440 0.1134492609 - - ATP-dependent DNA helicase pcrA, putative [Ricinus communis]
6 Hb_009687_010 0.1173636552 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X4 [Jatropha curcas]
7 Hb_001332_040 0.1177095137 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
8 Hb_003098_020 0.1195984342 - - 40S ribosomal protein S5B [Hevea brasiliensis]
9 Hb_000181_050 0.126465434 - - PREDICTED: uncharacterized protein LOC105637463 [Jatropha curcas]
10 Hb_000896_040 0.1282019419 - - BnaC02g13240D [Brassica napus]
11 Hb_003266_100 0.1288413389 - - Isomerase protein [Gossypium arboreum]
12 Hb_002236_040 0.1291327118 - - PREDICTED: cytochrome c [Jatropha curcas]
13 Hb_000034_070 0.1298369077 - - PREDICTED: DNA (cytosine-5)-methyltransferase 3B-like [Jatropha curcas]
14 Hb_186982_040 0.1324970984 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
15 Hb_000665_050 0.1337154236 - - PREDICTED: aberrant root formation protein 4 [Jatropha curcas]
16 Hb_003813_050 0.1338599207 - - PREDICTED: tRNA-specific adenosine deaminase 2-like isoform X1 [Jatropha curcas]
17 Hb_002205_090 0.1351406577 - - RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]
18 Hb_002014_020 0.1376639553 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
19 Hb_000103_270 0.1382261287 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]
20 Hb_000413_280 0.1386016785 - - PREDICTED: probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000015_030 Hb_000015_030 Hb_001623_060 Hb_001623_060 Hb_000015_030--Hb_001623_060 Hb_005914_010 Hb_005914_010 Hb_000015_030--Hb_005914_010 Hb_006698_030 Hb_006698_030 Hb_000015_030--Hb_006698_030 Hb_011671_440 Hb_011671_440 Hb_000015_030--Hb_011671_440 Hb_009687_010 Hb_009687_010 Hb_000015_030--Hb_009687_010 Hb_001332_040 Hb_001332_040 Hb_000015_030--Hb_001332_040 Hb_186982_040 Hb_186982_040 Hb_001623_060--Hb_186982_040 Hb_006816_260 Hb_006816_260 Hb_001623_060--Hb_006816_260 Hb_000538_120 Hb_000538_120 Hb_001623_060--Hb_000538_120 Hb_000136_350 Hb_000136_350 Hb_001623_060--Hb_000136_350 Hb_004109_340 Hb_004109_340 Hb_001623_060--Hb_004109_340 Hb_004216_050 Hb_004216_050 Hb_005914_010--Hb_004216_050 Hb_005305_150 Hb_005305_150 Hb_005914_010--Hb_005305_150 Hb_000028_590 Hb_000028_590 Hb_005914_010--Hb_000028_590 Hb_005914_010--Hb_011671_440 Hb_005914_010--Hb_009687_010 Hb_003098_020 Hb_003098_020 Hb_006698_030--Hb_003098_020 Hb_000103_270 Hb_000103_270 Hb_006698_030--Hb_000103_270 Hb_006698_030--Hb_005914_010 Hb_006698_030--Hb_005305_150 Hb_000496_120 Hb_000496_120 Hb_006698_030--Hb_000496_120 Hb_000413_280 Hb_000413_280 Hb_011671_440--Hb_000413_280 Hb_091433_020 Hb_091433_020 Hb_011671_440--Hb_091433_020 Hb_004767_080 Hb_004767_080 Hb_011671_440--Hb_004767_080 Hb_180074_010 Hb_180074_010 Hb_011671_440--Hb_180074_010 Hb_011671_440--Hb_000538_120 Hb_009687_010--Hb_000103_270 Hb_105602_010 Hb_105602_010 Hb_009687_010--Hb_105602_010 Hb_002027_140 Hb_002027_140 Hb_009687_010--Hb_002027_140 Hb_009687_010--Hb_006698_030 Hb_000329_760 Hb_000329_760 Hb_009687_010--Hb_000329_760 Hb_000286_060 Hb_000286_060 Hb_001332_040--Hb_000286_060 Hb_003266_100 Hb_003266_100 Hb_001332_040--Hb_003266_100 Hb_016522_010 Hb_016522_010 Hb_001332_040--Hb_016522_010 Hb_001332_040--Hb_000103_270 Hb_000621_020 Hb_000621_020 Hb_001332_040--Hb_000621_020 Hb_004429_090 Hb_004429_090 Hb_001332_040--Hb_004429_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.33731 1.57732 5.81243 6.70374 2.39517 4.50955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.87117 10.765 6.21138 13.9259 2.06803

CAGE analysis