Hb_000015_100

Information

Type -
Description -
Location Contig15: 97791-105696
Sequence    

Annotation

kegg
ID pop:POPTR_0010s21430g
description POPTRDRAFT_1092152; methionyl-tRNA synthetase family protein
nr
ID XP_012089507.1
description PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
swissprot
ID Q55729
description Methionine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=metG PE=3 SV=1
trembl
ID A0A067L949
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01491 PE=3 SV=1
Gene Ontology
ID GO:0005739
description probable methionine--trna mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12504: 97804-105882
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000015_100 0.0 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
2 Hb_000948_170 0.0668396231 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
3 Hb_000627_250 0.080588083 - - PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]
4 Hb_000033_110 0.0815279529 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
5 Hb_031284_070 0.0888636321 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
6 Hb_000816_100 0.0899101951 - - PREDICTED: APO protein 1, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_008206_060 0.0923346032 - - PREDICTED: preprotein translocase subunit SCY1, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_009252_040 0.0947533689 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
9 Hb_010812_050 0.0953019707 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Jatropha curcas]
10 Hb_001604_120 0.0953026204 - - PREDICTED: hemK methyltransferase family member 1 isoform X2 [Jatropha curcas]
11 Hb_001492_030 0.0969029397 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Jatropha curcas]
12 Hb_000445_140 0.0977814729 - - hypothetical protein RCOM_0561550 [Ricinus communis]
13 Hb_025557_050 0.0979980813 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
14 Hb_002027_090 0.0992507514 - - -
15 Hb_001021_220 0.09988303 - - PREDICTED: spermatogenesis-associated protein 20 isoform X1 [Jatropha curcas]
16 Hb_048141_020 0.1003684141 - - tetratricopeptide repeat-like superfamily protein, partial [Manihot esculenta]
17 Hb_021346_030 0.1003830823 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
18 Hb_004218_280 0.1009724726 - - Exoenzymes regulatory protein aepA precursor, putative [Ricinus communis]
19 Hb_000679_020 0.1010826641 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
20 Hb_005470_020 0.1013009457 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000015_100 Hb_000015_100 Hb_000948_170 Hb_000948_170 Hb_000015_100--Hb_000948_170 Hb_000627_250 Hb_000627_250 Hb_000015_100--Hb_000627_250 Hb_000033_110 Hb_000033_110 Hb_000015_100--Hb_000033_110 Hb_031284_070 Hb_031284_070 Hb_000015_100--Hb_031284_070 Hb_000816_100 Hb_000816_100 Hb_000015_100--Hb_000816_100 Hb_008206_060 Hb_008206_060 Hb_000015_100--Hb_008206_060 Hb_000948_170--Hb_031284_070 Hb_021346_030 Hb_021346_030 Hb_000948_170--Hb_021346_030 Hb_000948_170--Hb_000627_250 Hb_001205_300 Hb_001205_300 Hb_000948_170--Hb_001205_300 Hb_000948_170--Hb_000816_100 Hb_000627_250--Hb_031284_070 Hb_000627_250--Hb_021346_030 Hb_001259_020 Hb_001259_020 Hb_000627_250--Hb_001259_020 Hb_025557_050 Hb_025557_050 Hb_000627_250--Hb_025557_050 Hb_013405_080 Hb_013405_080 Hb_000033_110--Hb_013405_080 Hb_009252_040 Hb_009252_040 Hb_000033_110--Hb_009252_040 Hb_000320_470 Hb_000320_470 Hb_000033_110--Hb_000320_470 Hb_004003_040 Hb_004003_040 Hb_000033_110--Hb_004003_040 Hb_026053_040 Hb_026053_040 Hb_000033_110--Hb_026053_040 Hb_031284_070--Hb_021346_030 Hb_001660_120 Hb_001660_120 Hb_031284_070--Hb_001660_120 Hb_000740_050 Hb_000740_050 Hb_031284_070--Hb_000740_050 Hb_031284_070--Hb_001205_300 Hb_048141_020 Hb_048141_020 Hb_000816_100--Hb_048141_020 Hb_001089_060 Hb_001089_060 Hb_000816_100--Hb_001089_060 Hb_000816_100--Hb_001259_020 Hb_023278_010 Hb_023278_010 Hb_000816_100--Hb_023278_010 Hb_000816_100--Hb_021346_030 Hb_011931_060 Hb_011931_060 Hb_000816_100--Hb_011931_060 Hb_008206_060--Hb_031284_070 Hb_010812_050 Hb_010812_050 Hb_008206_060--Hb_010812_050 Hb_000331_130 Hb_000331_130 Hb_008206_060--Hb_000331_130 Hb_000363_060 Hb_000363_060 Hb_008206_060--Hb_000363_060 Hb_000445_140 Hb_000445_140 Hb_008206_060--Hb_000445_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.01381 3.82494 6.96119 4.2144 6.23055 8.8073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.41644 2.49863 3.53168 4.06435 11.6627

CAGE analysis