Hb_000015_140

Information

Type -
Description -
Location Contig15: 123701-124938
Sequence    

Annotation

kegg
ID vvi:100265096
description CASP-like protein 4C1
nr
ID XP_002283841.1
description PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
swissprot
ID B9HTK2
description CASP-like protein 4C2 OS=Populus trichocarpa GN=POPTRDRAFT_822486 PE=3 SV=1
trembl
ID A0A067FJW8
description CASP-like protein OS=Citrus sinensis GN=CISIN_1g029463mg PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 4c1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12505: 123544-124651
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000015_140 0.0 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
2 Hb_066207_020 0.1070143792 - - hypothetical protein JCGZ_22048 [Jatropha curcas]
3 Hb_000740_080 0.1382343664 - - -
4 Hb_002768_040 0.1424442352 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000897_010 0.147539166 - - hypothetical protein JCGZ_13196 [Jatropha curcas]
6 Hb_019299_020 0.1482678581 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
7 Hb_002122_060 0.1507357215 - - PREDICTED: putative disease resistance protein RGA4 [Beta vulgaris subsp. vulgaris]
8 Hb_000313_280 0.1522706897 - - hypothetical protein PRUPE_ppa014856mg, partial [Prunus persica]
9 Hb_000563_140 0.1533910477 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
10 Hb_003001_050 0.1556831975 - - hypothetical protein RCOM_1749890 [Ricinus communis]
11 Hb_000139_460 0.1569271408 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
12 Hb_002894_070 0.1593159615 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein B [Jatropha curcas]
13 Hb_000352_360 0.1626001652 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
14 Hb_000616_100 0.1629606247 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
15 Hb_000450_170 0.1674037064 - - conserved hypothetical protein [Ricinus communis]
16 Hb_059226_020 0.1705328568 - - hypothetical protein B456_008G287700 [Gossypium raimondii]
17 Hb_001322_010 0.1707284436 - - PREDICTED: uncharacterized protein LOC105632322 [Jatropha curcas]
18 Hb_000000_300 0.172681608 - - PREDICTED: pathogenesis-related protein 5 [Jatropha curcas]
19 Hb_000149_020 0.1760548149 - - Proline-rich receptor-like protein kinase PERK14 [Glycine soja]
20 Hb_000320_030 0.176736912 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000015_140 Hb_000015_140 Hb_066207_020 Hb_066207_020 Hb_000015_140--Hb_066207_020 Hb_000740_080 Hb_000740_080 Hb_000015_140--Hb_000740_080 Hb_002768_040 Hb_002768_040 Hb_000015_140--Hb_002768_040 Hb_000897_010 Hb_000897_010 Hb_000015_140--Hb_000897_010 Hb_019299_020 Hb_019299_020 Hb_000015_140--Hb_019299_020 Hb_002122_060 Hb_002122_060 Hb_000015_140--Hb_002122_060 Hb_059226_020 Hb_059226_020 Hb_066207_020--Hb_059226_020 Hb_066207_020--Hb_000740_080 Hb_066207_020--Hb_000897_010 Hb_004397_010 Hb_004397_010 Hb_066207_020--Hb_004397_010 Hb_004926_010 Hb_004926_010 Hb_066207_020--Hb_004926_010 Hb_000740_080--Hb_019299_020 Hb_000740_080--Hb_000897_010 Hb_000149_020 Hb_000149_020 Hb_000740_080--Hb_000149_020 Hb_000740_080--Hb_002768_040 Hb_004970_100 Hb_004970_100 Hb_000740_080--Hb_004970_100 Hb_000352_360 Hb_000352_360 Hb_000740_080--Hb_000352_360 Hb_005056_120 Hb_005056_120 Hb_002768_040--Hb_005056_120 Hb_027405_010 Hb_027405_010 Hb_002768_040--Hb_027405_010 Hb_003607_080 Hb_003607_080 Hb_002768_040--Hb_003607_080 Hb_002768_040--Hb_000897_010 Hb_002768_040--Hb_000352_360 Hb_007403_100 Hb_007403_100 Hb_000897_010--Hb_007403_100 Hb_000897_010--Hb_000149_020 Hb_000897_010--Hb_000352_360 Hb_002007_330 Hb_002007_330 Hb_000897_010--Hb_002007_330 Hb_000139_460 Hb_000139_460 Hb_019299_020--Hb_000139_460 Hb_002304_110 Hb_002304_110 Hb_019299_020--Hb_002304_110 Hb_001257_140 Hb_001257_140 Hb_019299_020--Hb_001257_140 Hb_010863_020 Hb_010863_020 Hb_019299_020--Hb_010863_020 Hb_019299_020--Hb_000352_360 Hb_000616_100 Hb_000616_100 Hb_002122_060--Hb_000616_100 Hb_000313_280 Hb_000313_280 Hb_002122_060--Hb_000313_280 Hb_002894_070 Hb_002894_070 Hb_002122_060--Hb_002894_070 Hb_008536_030 Hb_008536_030 Hb_002122_060--Hb_008536_030 Hb_002054_090 Hb_002054_090 Hb_002122_060--Hb_002054_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0829924 0.872146 0.793154 7.45669 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.254337 0.0499991 0 1.33368 0.403224

CAGE analysis