Hb_000015_150

Information

Type -
Description -
Location Contig15: 127372-131580
Sequence    

Annotation

kegg
ID pop:POPTR_0008s05400g
description POPTRDRAFT_420042; Ubiquitin-conjugating enzyme E2 7 family protein
nr
ID XP_002312086.2
description Ubiquitin-conjugating enzyme E2 7 family protein [Populus trichocarpa]
swissprot
ID P42747
description Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=1 SV=1
trembl
ID B9HMG1
description Ubiquitin-conjugating enzyme E2 7 family protein OS=Populus trichocarpa GN=POPTR_0008s05400g PE=3 SV=2
Gene Ontology
ID GO:0005634
description ubiquitin-conjugating enzyme e2 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12506: 127661-131555 , PASA_asmbl_12507: 130506-130873
cDNA
(Sanger)
(ID:Location)		 036_C19.ab1: 127801-131555

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000015_150 0.0 - - Ubiquitin-conjugating enzyme E2 7 family protein [Populus trichocarpa]
2 Hb_001001_090 0.0995583341 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
3 Hb_000649_330 0.100922563 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
4 Hb_114943_020 0.1120981222 - - PREDICTED: NADPH--cytochrome P450 reductase 2 [Jatropha curcas]
5 Hb_002463_050 0.1162753169 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002411_160 0.1220831858 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
7 Hb_027043_010 0.1227369698 - - PREDICTED: glycerophosphodiester phosphodiesterase GDPD4 [Jatropha curcas]
8 Hb_086639_050 0.1260742783 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
9 Hb_004545_080 0.1288575298 - - protein with unknown function [Ricinus communis]
10 Hb_001117_080 0.1288817596 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
11 Hb_000968_060 0.1299763429 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
12 Hb_000363_180 0.1300660833 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
13 Hb_000032_410 0.1325739672 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
14 Hb_000477_070 0.1336585902 - - histone h2a, putative [Ricinus communis]
15 Hb_005214_070 0.1361861166 - - PREDICTED: fatty acid amide hydrolase [Jatropha curcas]
16 Hb_000111_390 0.1366678367 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
17 Hb_001663_130 0.1374576728 - - acyl-CoA thioesterase, putative [Ricinus communis]
18 Hb_002432_050 0.1385482022 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
19 Hb_002249_170 0.1386767889 - - copine, putative [Ricinus communis]
20 Hb_003894_060 0.1398019242 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000015_150 Hb_000015_150 Hb_001001_090 Hb_001001_090 Hb_000015_150--Hb_001001_090 Hb_000649_330 Hb_000649_330 Hb_000015_150--Hb_000649_330 Hb_114943_020 Hb_114943_020 Hb_000015_150--Hb_114943_020 Hb_002463_050 Hb_002463_050 Hb_000015_150--Hb_002463_050 Hb_002411_160 Hb_002411_160 Hb_000015_150--Hb_002411_160 Hb_027043_010 Hb_027043_010 Hb_000015_150--Hb_027043_010 Hb_001001_090--Hb_000649_330 Hb_005214_070 Hb_005214_070 Hb_001001_090--Hb_005214_070 Hb_009078_020 Hb_009078_020 Hb_001001_090--Hb_009078_020 Hb_011188_010 Hb_011188_010 Hb_001001_090--Hb_011188_010 Hb_001663_130 Hb_001663_130 Hb_001001_090--Hb_001663_130 Hb_000649_330--Hb_009078_020 Hb_002849_050 Hb_002849_050 Hb_000649_330--Hb_002849_050 Hb_000649_330--Hb_011188_010 Hb_000649_330--Hb_005214_070 Hb_000363_180 Hb_000363_180 Hb_114943_020--Hb_000363_180 Hb_114943_020--Hb_002411_160 Hb_002740_040 Hb_002740_040 Hb_114943_020--Hb_002740_040 Hb_000470_110 Hb_000470_110 Hb_114943_020--Hb_000470_110 Hb_005833_030 Hb_005833_030 Hb_114943_020--Hb_005833_030 Hb_002897_010 Hb_002897_010 Hb_002463_050--Hb_002897_010 Hb_004678_030 Hb_004678_030 Hb_002463_050--Hb_004678_030 Hb_003687_040 Hb_003687_040 Hb_002463_050--Hb_003687_040 Hb_000061_310 Hb_000061_310 Hb_002463_050--Hb_000061_310 Hb_000654_050 Hb_000654_050 Hb_002463_050--Hb_000654_050 Hb_086639_050 Hb_086639_050 Hb_002411_160--Hb_086639_050 Hb_080147_020 Hb_080147_020 Hb_002411_160--Hb_080147_020 Hb_002411_160--Hb_001001_090 Hb_002411_160--Hb_000649_330 Hb_000098_180 Hb_000098_180 Hb_002411_160--Hb_000098_180 Hb_000477_070 Hb_000477_070 Hb_027043_010--Hb_000477_070 Hb_027043_010--Hb_002849_050 Hb_027043_010--Hb_000649_330 Hb_052135_020 Hb_052135_020 Hb_027043_010--Hb_052135_020 Hb_002259_220 Hb_002259_220 Hb_027043_010--Hb_002259_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.70816 14.4665 29.3631 19.5278 2.30013 5.83253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.08031 1.27477 1.5886 9.61766 10.9032

CAGE analysis