Hb_000015_160

Information

Type -
Description -
Location Contig15: 139083-141667
Sequence    

Annotation

kegg
ID zma:100272911
description pco094428; LOC100272911
nr
ID EMS50129.1
description Heat shock cognate 70 kDa protein 1 [Triticum urartu]
swissprot
ID Q92260
description Heat shock 70 kDa protein (Fragment) OS=Penicillium citrinum GN=HSP70 PE=1 SV=1
trembl
ID M7ZQ01
description Heat shock cognate 70 kDa protein 1 OS=Triticum urartu GN=TRIUR3_32152 PE=3 SV=1
Gene Ontology
ID GO:0005524
description heat shock protein 70

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12508: 138987-141967
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000015_160 0.0 - - Heat shock cognate 70 kDa protein 1 [Triticum urartu]
2 Hb_000991_050 0.1072312019 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
3 Hb_012753_040 0.111209999 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
4 Hb_002387_070 0.1458739116 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial [Jatropha curcas]
5 Hb_002774_150 0.1498953194 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
6 Hb_009674_080 0.1502298285 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
7 Hb_000631_140 0.1514714549 - - PREDICTED: chaperone protein ClpB1 [Jatropha curcas]
8 Hb_004994_300 0.1540837522 - - synaptotagmin, putative [Ricinus communis]
9 Hb_000127_190 0.1575967483 - - PREDICTED: protein GIGANTEA [Jatropha curcas]
10 Hb_000027_180 0.1611520384 - - PREDICTED: uncharacterized protein LOC105642058 [Jatropha curcas]
11 Hb_000460_060 0.1618566263 - - importin beta-1, putative [Ricinus communis]
12 Hb_004324_060 0.1631956658 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
13 Hb_003605_220 0.1669191038 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
14 Hb_012038_010 0.1673292042 - - phospholipid-transporting atpase, putative [Ricinus communis]
15 Hb_044653_020 0.170687282 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
16 Hb_007313_070 0.1768018608 - - PREDICTED: gibberellin receptor GID1C [Jatropha curcas]
17 Hb_004648_070 0.1770494893 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_012082_010 0.1777328678 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
19 Hb_002918_320 0.1785182729 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
20 Hb_000139_180 0.1793957557 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]

Gene co-expression network

sample Hb_000015_160 Hb_000015_160 Hb_000991_050 Hb_000991_050 Hb_000015_160--Hb_000991_050 Hb_012753_040 Hb_012753_040 Hb_000015_160--Hb_012753_040 Hb_002387_070 Hb_002387_070 Hb_000015_160--Hb_002387_070 Hb_002774_150 Hb_002774_150 Hb_000015_160--Hb_002774_150 Hb_009674_080 Hb_009674_080 Hb_000015_160--Hb_009674_080 Hb_000631_140 Hb_000631_140 Hb_000015_160--Hb_000631_140 Hb_000991_050--Hb_012753_040 Hb_000991_050--Hb_002774_150 Hb_000991_050--Hb_009674_080 Hb_004324_060 Hb_004324_060 Hb_000991_050--Hb_004324_060 Hb_000139_180 Hb_000139_180 Hb_000991_050--Hb_000139_180 Hb_012753_040--Hb_009674_080 Hb_012753_040--Hb_002774_150 Hb_000922_220 Hb_000922_220 Hb_012753_040--Hb_000922_220 Hb_003120_070 Hb_003120_070 Hb_012753_040--Hb_003120_070 Hb_012368_100 Hb_012368_100 Hb_002387_070--Hb_012368_100 Hb_044653_020 Hb_044653_020 Hb_002387_070--Hb_044653_020 Hb_000460_060 Hb_000460_060 Hb_002387_070--Hb_000460_060 Hb_000896_060 Hb_000896_060 Hb_002387_070--Hb_000896_060 Hb_000117_070 Hb_000117_070 Hb_002387_070--Hb_000117_070 Hb_000526_060 Hb_000526_060 Hb_002387_070--Hb_000526_060 Hb_002774_150--Hb_004324_060 Hb_002485_040 Hb_002485_040 Hb_002774_150--Hb_002485_040 Hb_012038_010 Hb_012038_010 Hb_002774_150--Hb_012038_010 Hb_172421_010 Hb_172421_010 Hb_002774_150--Hb_172421_010 Hb_004994_300 Hb_004994_300 Hb_002774_150--Hb_004994_300 Hb_009674_080--Hb_012038_010 Hb_009674_080--Hb_000526_060 Hb_009674_080--Hb_003120_070 Hb_009674_080--Hb_000117_070 Hb_120470_010 Hb_120470_010 Hb_009674_080--Hb_120470_010 Hb_000631_140--Hb_012753_040 Hb_002804_030 Hb_002804_030 Hb_000631_140--Hb_002804_030 Hb_010921_020 Hb_010921_020 Hb_000631_140--Hb_010921_020 Hb_000631_140--Hb_000991_050 Hb_000302_300 Hb_000302_300 Hb_000631_140--Hb_000302_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
182.669 2352.22 513.683 462.327 853.758 238.5
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
97.7948 100.285 343.867 326.415 974.278

CAGE analysis