Hb_000015_180

Information

Type transcription factor
Description TF Family: ERF
Location Contig15: 159785-160498
Sequence    

Annotation

kegg
ID rcu:RCOM_0546450
description Ethylene-responsive transcription factor, putative
nr
ID NP_001295747.1
description ethylene-responsive transcription factor 3-like [Jatropha curcas]
swissprot
ID O80339
description Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1
trembl
ID A0A068BGH5
description C-repeat binding transcription factor 2 OS=Jatropha curcas PE=2 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12511: 159519-160748
cDNA
(Sanger)
(ID:Location)		 042_K12.ab1: 159519-160249 , 053_L15.ab1: 159519-160255

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000015_180 0.0 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
2 Hb_000220_090 0.0889394987 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
3 Hb_002835_260 0.1184579351 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
4 Hb_000434_050 0.1203817638 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
5 Hb_102100_010 0.1239001724 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
6 Hb_003038_010 0.1291123108 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_011120_020 0.1312567093 - - PREDICTED: casein kinase I-like isoform X1 [Jatropha curcas]
8 Hb_056012_010 0.1410480197 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
9 Hb_000960_010 0.1478748094 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
10 Hb_136886_010 0.1478906313 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
11 Hb_001504_270 0.1479713015 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
12 Hb_000506_140 0.1498432667 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
13 Hb_001956_190 0.1516427196 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
14 Hb_000103_400 0.1527597991 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
15 Hb_138575_010 0.1550341395 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
16 Hb_004787_100 0.1561596926 - - PREDICTED: transcription factor bHLH47 [Jatropha curcas]
17 Hb_003053_060 0.1623501214 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
18 Hb_000506_130 0.1666064052 - - DGCR14-related family protein [Populus trichocarpa]
19 Hb_002217_270 0.166825386 - - PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]
20 Hb_000803_060 0.1687007383 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000015_180 Hb_000015_180 Hb_000220_090 Hb_000220_090 Hb_000015_180--Hb_000220_090 Hb_002835_260 Hb_002835_260 Hb_000015_180--Hb_002835_260 Hb_000434_050 Hb_000434_050 Hb_000015_180--Hb_000434_050 Hb_102100_010 Hb_102100_010 Hb_000015_180--Hb_102100_010 Hb_003038_010 Hb_003038_010 Hb_000015_180--Hb_003038_010 Hb_011120_020 Hb_011120_020 Hb_000015_180--Hb_011120_020 Hb_000220_090--Hb_003038_010 Hb_056012_010 Hb_056012_010 Hb_000220_090--Hb_056012_010 Hb_000803_060 Hb_000803_060 Hb_000220_090--Hb_000803_060 Hb_000220_090--Hb_102100_010 Hb_000220_090--Hb_000434_050 Hb_011416_020 Hb_011416_020 Hb_002835_260--Hb_011416_020 Hb_002835_260--Hb_011120_020 Hb_002835_260--Hb_000220_090 Hb_002835_260--Hb_000434_050 Hb_136886_010 Hb_136886_010 Hb_002835_260--Hb_136886_010 Hb_185080_010 Hb_185080_010 Hb_000434_050--Hb_185080_010 Hb_078901_010 Hb_078901_010 Hb_000434_050--Hb_078901_010 Hb_000805_150 Hb_000805_150 Hb_000434_050--Hb_000805_150 Hb_010589_130 Hb_010589_130 Hb_000434_050--Hb_010589_130 Hb_102100_010--Hb_056012_010 Hb_007951_120 Hb_007951_120 Hb_102100_010--Hb_007951_120 Hb_016404_010 Hb_016404_010 Hb_102100_010--Hb_016404_010 Hb_138575_010 Hb_138575_010 Hb_102100_010--Hb_138575_010 Hb_001258_150 Hb_001258_150 Hb_003038_010--Hb_001258_150 Hb_001546_110 Hb_001546_110 Hb_003038_010--Hb_001546_110 Hb_009838_060 Hb_009838_060 Hb_003038_010--Hb_009838_060 Hb_003494_060 Hb_003494_060 Hb_003038_010--Hb_003494_060 Hb_000003_430 Hb_000003_430 Hb_011120_020--Hb_000003_430 Hb_011120_020--Hb_011416_020 Hb_002918_150 Hb_002918_150 Hb_011120_020--Hb_002918_150 Hb_011120_020--Hb_000220_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.7467 403.616 41.6907 79.5889 20.5887 13.8063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.13082 18.6884 12.5051 13.4086 14.2314

CAGE analysis