Hb_000015_210

Information

Type -
Description -
Location Contig15: 177054-184670
Sequence    

Annotation

kegg
ID tcc:TCM_042786
description hypothetical protein
nr
ID XP_012089400.1
description PREDICTED: uncharacterized protein LOC105647781 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LJX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01480 PE=4 SV=1
Gene Ontology
ID GO:0010181
description PREDICTED: uncharacterized protein LOC105647781

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12515: 176069-176395 , PASA_asmbl_12516: 177109-184419
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000015_210 0.0 - - PREDICTED: uncharacterized protein LOC105647781 [Jatropha curcas]
2 Hb_024650_050 0.0693008588 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
3 Hb_000317_430 0.0814377054 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
4 Hb_025193_050 0.0826970989 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
5 Hb_004724_100 0.0848196363 - - 60S ribosomal protein L10aA [Hevea brasiliensis]
6 Hb_000035_380 0.0949667885 - - -
7 Hb_004595_020 0.0955825839 - - PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]
8 Hb_000175_070 0.0956988938 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
9 Hb_118419_020 0.0979197089 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
10 Hb_001235_210 0.0980912886 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_000152_430 0.1018778427 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
12 Hb_012515_010 0.1039257992 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
13 Hb_001840_120 0.1050557839 - - PREDICTED: uncharacterized protein LOC104228746 [Nicotiana sylvestris]
14 Hb_011139_020 0.1063464692 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
15 Hb_007193_100 0.1065964439 - - syntaxin family protein [Populus trichocarpa]
16 Hb_029510_140 0.107279915 - - PREDICTED: uncharacterized protein LOC105635017 [Jatropha curcas]
17 Hb_000465_060 0.107750586 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
18 Hb_004440_050 0.1087528867 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
19 Hb_000963_190 0.1088356361 - - Glutamine amidotransferase subunit pdxT, putative [Ricinus communis]
20 Hb_000928_240 0.1093969038 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]

Gene co-expression network

sample Hb_000015_210 Hb_000015_210 Hb_024650_050 Hb_024650_050 Hb_000015_210--Hb_024650_050 Hb_000317_430 Hb_000317_430 Hb_000015_210--Hb_000317_430 Hb_025193_050 Hb_025193_050 Hb_000015_210--Hb_025193_050 Hb_004724_100 Hb_004724_100 Hb_000015_210--Hb_004724_100 Hb_000035_380 Hb_000035_380 Hb_000015_210--Hb_000035_380 Hb_004595_020 Hb_004595_020 Hb_000015_210--Hb_004595_020 Hb_011139_020 Hb_011139_020 Hb_024650_050--Hb_011139_020 Hb_024650_050--Hb_025193_050 Hb_001019_090 Hb_001019_090 Hb_024650_050--Hb_001019_090 Hb_000152_430 Hb_000152_430 Hb_024650_050--Hb_000152_430 Hb_012515_010 Hb_012515_010 Hb_024650_050--Hb_012515_010 Hb_000317_430--Hb_000035_380 Hb_000175_070 Hb_000175_070 Hb_000317_430--Hb_000175_070 Hb_118419_020 Hb_118419_020 Hb_000317_430--Hb_118419_020 Hb_060809_010 Hb_060809_010 Hb_000317_430--Hb_060809_010 Hb_000365_360 Hb_000365_360 Hb_000317_430--Hb_000365_360 Hb_007193_100 Hb_007193_100 Hb_000317_430--Hb_007193_100 Hb_025193_050--Hb_012515_010 Hb_025193_050--Hb_011139_020 Hb_025193_050--Hb_004595_020 Hb_025193_050--Hb_000152_430 Hb_004453_150 Hb_004453_150 Hb_025193_050--Hb_004453_150 Hb_003874_020 Hb_003874_020 Hb_004724_100--Hb_003874_020 Hb_000510_090 Hb_000510_090 Hb_004724_100--Hb_000510_090 Hb_000371_080 Hb_000371_080 Hb_004724_100--Hb_000371_080 Hb_004724_100--Hb_000175_070 Hb_004724_100--Hb_024650_050 Hb_000200_210 Hb_000200_210 Hb_004724_100--Hb_000200_210 Hb_000035_380--Hb_060809_010 Hb_001221_230 Hb_001221_230 Hb_000035_380--Hb_001221_230 Hb_000035_380--Hb_000365_360 Hb_000035_380--Hb_118419_020 Hb_001214_130 Hb_001214_130 Hb_000035_380--Hb_001214_130 Hb_001840_120 Hb_001840_120 Hb_004595_020--Hb_001840_120 Hb_004595_020--Hb_012515_010 Hb_004595_020--Hb_011139_020 Hb_000465_060 Hb_000465_060 Hb_004595_020--Hb_000465_060 Hb_000479_180 Hb_000479_180 Hb_004595_020--Hb_000479_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.20686 1.02978 1.50249 0.928285 4.88899 10.1826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.51266 8.7192 3.49363 2.58151 1.56878

CAGE analysis