Hb_000016_010

Information

Type -
Description -
Location Contig16: 805-2617
Sequence    

Annotation

kegg
ID pda:103696510
description uncharacterized LOC103696510
nr
ID XP_012068505.1
description PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID Q8RU68
description Putative 22 kDa kafirin cluster; Ty3-Gypsy type OS=Oryza sativa GN=OSJNBa0022D10.4 PE=4 SV=1
Gene Ontology
ID GO:0003676
description ac099402_4 22 kda kafirin cluster ty3-gypsy type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000016_010 0.0 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
2 Hb_008424_010 0.0012948742 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_005432_050 0.0350895984 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
4 Hb_000336_300 0.0562913347 - - -
5 Hb_001066_020 0.057707211 - - PREDICTED: uncharacterized protein LOC104908874, partial [Beta vulgaris subsp. vulgaris]
6 Hb_133862_010 0.0735201746 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
7 Hb_135941_010 0.076873716 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
8 Hb_012264_040 0.0885898864 - - -
9 Hb_001081_040 0.0967581888 - - hypothetical protein MIMGU_mgv11b021166mg, partial [Erythranthe guttata]
10 Hb_000994_010 0.1349662673 - - hypothetical protein JCGZ_13899 [Jatropha curcas]
11 Hb_003637_030 0.1748427808 - - -
12 Hb_086484_010 0.1951325032 - - PREDICTED: uncharacterized protein LOC101259761 [Solanum lycopersicum]
13 Hb_102355_010 0.1992517869 - - PREDICTED: uncharacterized protein LOC104094591, partial [Nicotiana tomentosiformis]
14 Hb_002708_010 0.2198282957 - - -
15 Hb_185830_100 0.221470405 - - -
16 Hb_001863_210 0.222951749 - - -
17 Hb_006387_010 0.2313266833 - - PREDICTED: uncharacterized protein LOC105649124 [Jatropha curcas]
18 Hb_049827_010 0.2348623383 - - PREDICTED: uncharacterized protein LOC105762110 [Gossypium raimondii]
19 Hb_041177_010 0.2348808665 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
20 Hb_003392_010 0.2378709365 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]

Gene co-expression network

sample Hb_000016_010 Hb_000016_010 Hb_008424_010 Hb_008424_010 Hb_000016_010--Hb_008424_010 Hb_005432_050 Hb_005432_050 Hb_000016_010--Hb_005432_050 Hb_000336_300 Hb_000336_300 Hb_000016_010--Hb_000336_300 Hb_001066_020 Hb_001066_020 Hb_000016_010--Hb_001066_020 Hb_133862_010 Hb_133862_010 Hb_000016_010--Hb_133862_010 Hb_135941_010 Hb_135941_010 Hb_000016_010--Hb_135941_010 Hb_008424_010--Hb_005432_050 Hb_008424_010--Hb_001066_020 Hb_008424_010--Hb_000336_300 Hb_008424_010--Hb_133862_010 Hb_008424_010--Hb_135941_010 Hb_005432_050--Hb_001066_020 Hb_005432_050--Hb_133862_010 Hb_005432_050--Hb_135941_010 Hb_012264_040 Hb_012264_040 Hb_005432_050--Hb_012264_040 Hb_001081_040 Hb_001081_040 Hb_000336_300--Hb_001081_040 Hb_000994_010 Hb_000994_010 Hb_000336_300--Hb_000994_010 Hb_000336_300--Hb_005432_050 Hb_000336_300--Hb_001066_020 Hb_001066_020--Hb_133862_010 Hb_001066_020--Hb_135941_010 Hb_001066_020--Hb_012264_040 Hb_133862_010--Hb_135941_010 Hb_133862_010--Hb_012264_040 Hb_135941_010--Hb_012264_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0360424 0 0 0.0135832 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis