Hb_000016_030

Information

Type -
Description -
Location Contig16: 72171-86887
Sequence    

Annotation

kegg
ID pop:POPTR_0009s14090g
description POPTRDRAFT_1086398; hypothetical protein
nr
ID XP_012077706.1
description PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Jatropha curcas]
swissprot
ID P70187
description Hippocampus abundant transcript 1 protein OS=Mus musculus GN=Hiat1 PE=2 SV=3
trembl
ID A0A067KAP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13068 PE=4 SV=1
Gene Ontology
ID GO:0016021
description hippocampus abundant transcript-like protein 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14263: 71985-86831 , PASA_asmbl_14264: 73334-73540
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000016_030 0.0 - - PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Jatropha curcas]
2 Hb_004324_240 0.1705964775 - - tetrahydrofolylpolyglutamate synthase, putative [Ricinus communis]
3 Hb_000270_160 0.1717733127 - - PREDICTED: uncharacterized protein LOC102625351 [Citrus sinensis]
4 Hb_000302_160 0.1745071618 - - PREDICTED: uncharacterized protein LOC105648403 [Jatropha curcas]
5 Hb_000198_070 0.182211809 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
6 Hb_004374_080 0.1853703501 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
7 Hb_000365_160 0.1853837511 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
8 Hb_033642_100 0.1867483101 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Prunus mume]
9 Hb_000347_270 0.1871569702 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
10 Hb_001488_340 0.1885577974 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
11 Hb_001882_110 0.1885841528 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
12 Hb_130323_010 0.1923611547 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
13 Hb_000087_030 0.1924107215 - - hypothetical protein JCGZ_02243 [Jatropha curcas]
14 Hb_165279_010 0.1938039387 - - Kiwellin, putative [Ricinus communis]
15 Hb_004657_090 0.1944668778 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
16 Hb_000203_230 0.1994594458 - - PREDICTED: probable inactive dual specificity protein phosphatase-like At4g18593 [Jatropha curcas]
17 Hb_000365_090 0.1997404706 - - receptor protein kinase, putative [Ricinus communis]
18 Hb_001040_120 0.2053633934 - - allantoinase, putative [Ricinus communis]
19 Hb_011953_030 0.2060174509 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
20 Hb_001141_410 0.2069155404 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]

Gene co-expression network

sample Hb_000016_030 Hb_000016_030 Hb_004324_240 Hb_004324_240 Hb_000016_030--Hb_004324_240 Hb_000270_160 Hb_000270_160 Hb_000016_030--Hb_000270_160 Hb_000302_160 Hb_000302_160 Hb_000016_030--Hb_000302_160 Hb_000198_070 Hb_000198_070 Hb_000016_030--Hb_000198_070 Hb_004374_080 Hb_004374_080 Hb_000016_030--Hb_004374_080 Hb_000365_160 Hb_000365_160 Hb_000016_030--Hb_000365_160 Hb_005460_030 Hb_005460_030 Hb_004324_240--Hb_005460_030 Hb_018954_020 Hb_018954_020 Hb_004324_240--Hb_018954_020 Hb_001916_120 Hb_001916_120 Hb_004324_240--Hb_001916_120 Hb_002159_030 Hb_002159_030 Hb_004324_240--Hb_002159_030 Hb_000215_260 Hb_000215_260 Hb_004324_240--Hb_000215_260 Hb_000031_280 Hb_000031_280 Hb_000270_160--Hb_000031_280 Hb_000935_090 Hb_000935_090 Hb_000270_160--Hb_000935_090 Hb_002681_170 Hb_002681_170 Hb_000270_160--Hb_002681_170 Hb_000879_160 Hb_000879_160 Hb_000270_160--Hb_000879_160 Hb_000347_270 Hb_000347_270 Hb_000270_160--Hb_000347_270 Hb_000139_230 Hb_000139_230 Hb_000270_160--Hb_000139_230 Hb_089889_020 Hb_089889_020 Hb_000302_160--Hb_089889_020 Hb_001752_040 Hb_001752_040 Hb_000302_160--Hb_001752_040 Hb_000302_160--Hb_000365_160 Hb_007123_070 Hb_007123_070 Hb_000302_160--Hb_007123_070 Hb_002411_130 Hb_002411_130 Hb_000302_160--Hb_002411_130 Hb_000302_160--Hb_000198_070 Hb_000606_080 Hb_000606_080 Hb_000198_070--Hb_000606_080 Hb_012132_040 Hb_012132_040 Hb_000198_070--Hb_012132_040 Hb_013691_020 Hb_013691_020 Hb_000198_070--Hb_013691_020 Hb_002067_020 Hb_002067_020 Hb_000198_070--Hb_002067_020 Hb_000364_080 Hb_000364_080 Hb_000198_070--Hb_000364_080 Hb_000523_090 Hb_000523_090 Hb_000198_070--Hb_000523_090 Hb_002000_060 Hb_002000_060 Hb_004374_080--Hb_002000_060 Hb_004374_080--Hb_000270_160 Hb_004374_080--Hb_000139_230 Hb_003872_010 Hb_003872_010 Hb_004374_080--Hb_003872_010 Hb_012404_070 Hb_012404_070 Hb_004374_080--Hb_012404_070 Hb_000566_100 Hb_000566_100 Hb_004374_080--Hb_000566_100 Hb_004920_060 Hb_004920_060 Hb_000365_160--Hb_004920_060 Hb_001910_020 Hb_001910_020 Hb_000365_160--Hb_001910_020 Hb_002307_350 Hb_002307_350 Hb_000365_160--Hb_002307_350 Hb_008246_030 Hb_008246_030 Hb_000365_160--Hb_008246_030 Hb_002411_180 Hb_002411_180 Hb_000365_160--Hb_002411_180 Hb_005408_020 Hb_005408_020 Hb_000365_160--Hb_005408_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.4244 6.86896 4.98725 16.6956 12.8265 22.3848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.87885 4.32973 0.0786183 1.45971 9.59034

CAGE analysis