Hb_000016_050

Information

Type -
Description -
Location Contig16: 112728-115314
Sequence    

Annotation

kegg
ID rcu:RCOM_1497860
description hypothetical protein
nr
ID XP_012090346.1
description PREDICTED: uncharacterized protein LOC105648535 [Jatropha curcas]
swissprot
ID Q9LF24
description Protein LONGIFOLIA 1 OS=Arabidopsis thaliana GN=LNG1 PE=1 SV=1
trembl
ID B9R9J2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1497860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14265: 113133-113499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000016_050 0.0 - - PREDICTED: uncharacterized protein LOC105648535 [Jatropha curcas]
2 Hb_012606_010 0.2524414645 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
3 Hb_001391_050 0.2655072334 - - PREDICTED: probable carboxylesterase 18 [Jatropha curcas]
4 Hb_007925_010 0.2677546416 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 1 [Jatropha curcas]
5 Hb_105959_010 0.2697557392 - - asparagine synthetase, putative [Ricinus communis]
6 Hb_000375_140 0.275270665 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
7 Hb_058620_060 0.2815088485 - - uncharacterized protein LOC105646159 precursor [Jatropha curcas]
8 Hb_067118_010 0.2951130815 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
9 Hb_113084_010 0.2953995424 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
10 Hb_145655_010 0.2964902638 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
11 Hb_000313_330 0.2974961566 - - PREDICTED: glucan endo-1,3-beta-glucosidase [Jatropha curcas]
12 Hb_002003_090 0.304862467 - - PREDICTED: TPR repeat-containing protein ZIP4 isoform X1 [Jatropha curcas]
13 Hb_000964_100 0.3094234652 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
14 Hb_003713_010 0.309601269 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000122_120 0.3118997661 - - PREDICTED: arogenate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
16 Hb_009748_010 0.3133084384 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
17 Hb_001289_020 0.3137551176 - - PREDICTED: uncharacterized protein LOC105635827 [Jatropha curcas]
18 Hb_000300_520 0.3141382546 - - hypothetical protein JCGZ_02702 [Jatropha curcas]
19 Hb_148209_030 0.3146029515 - - hypothetical protein VITISV_017120 [Vitis vinifera]
20 Hb_000932_050 0.3152162639 - - annexin [Manihot esculenta]

Gene co-expression network

sample Hb_000016_050 Hb_000016_050 Hb_012606_010 Hb_012606_010 Hb_000016_050--Hb_012606_010 Hb_001391_050 Hb_001391_050 Hb_000016_050--Hb_001391_050 Hb_007925_010 Hb_007925_010 Hb_000016_050--Hb_007925_010 Hb_105959_010 Hb_105959_010 Hb_000016_050--Hb_105959_010 Hb_000375_140 Hb_000375_140 Hb_000016_050--Hb_000375_140 Hb_058620_060 Hb_058620_060 Hb_000016_050--Hb_058620_060 Hb_000184_160 Hb_000184_160 Hb_012606_010--Hb_000184_160 Hb_004710_010 Hb_004710_010 Hb_012606_010--Hb_004710_010 Hb_121881_010 Hb_121881_010 Hb_012606_010--Hb_121881_010 Hb_003964_020 Hb_003964_020 Hb_012606_010--Hb_003964_020 Hb_001124_100 Hb_001124_100 Hb_012606_010--Hb_001124_100 Hb_000527_080 Hb_000527_080 Hb_012606_010--Hb_000527_080 Hb_005601_030 Hb_005601_030 Hb_001391_050--Hb_005601_030 Hb_183671_010 Hb_183671_010 Hb_001391_050--Hb_183671_010 Hb_115832_010 Hb_115832_010 Hb_001391_050--Hb_115832_010 Hb_047560_010 Hb_047560_010 Hb_001391_050--Hb_047560_010 Hb_000107_260 Hb_000107_260 Hb_001391_050--Hb_000107_260 Hb_001391_050--Hb_000375_140 Hb_001289_020 Hb_001289_020 Hb_007925_010--Hb_001289_020 Hb_007925_010--Hb_105959_010 Hb_002316_080 Hb_002316_080 Hb_007925_010--Hb_002316_080 Hb_069355_010 Hb_069355_010 Hb_007925_010--Hb_069355_010 Hb_007416_100 Hb_007416_100 Hb_007925_010--Hb_007416_100 Hb_000246_130 Hb_000246_130 Hb_007925_010--Hb_000246_130 Hb_008725_080 Hb_008725_080 Hb_105959_010--Hb_008725_080 Hb_003813_180 Hb_003813_180 Hb_105959_010--Hb_003813_180 Hb_105959_010--Hb_001289_020 Hb_000742_160 Hb_000742_160 Hb_105959_010--Hb_000742_160 Hb_003408_010 Hb_003408_010 Hb_105959_010--Hb_003408_010 Hb_002164_010 Hb_002164_010 Hb_000375_140--Hb_002164_010 Hb_002774_120 Hb_002774_120 Hb_000375_140--Hb_002774_120 Hb_000313_330 Hb_000313_330 Hb_000375_140--Hb_000313_330 Hb_002003_090 Hb_002003_090 Hb_000375_140--Hb_002003_090 Hb_107658_010 Hb_107658_010 Hb_000375_140--Hb_107658_010 Hb_003536_090 Hb_003536_090 Hb_000375_140--Hb_003536_090 Hb_000252_220 Hb_000252_220 Hb_058620_060--Hb_000252_220 Hb_002539_100 Hb_002539_100 Hb_058620_060--Hb_002539_100 Hb_058620_060--Hb_001124_100 Hb_001606_060 Hb_001606_060 Hb_058620_060--Hb_001606_060 Hb_027073_010 Hb_027073_010 Hb_058620_060--Hb_027073_010 Hb_011671_080 Hb_011671_080 Hb_058620_060--Hb_011671_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.86248 0.0681155 1.53085 4.74141 0.0521654 0.0163965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.142702 0 0.609804 0.369835 1.01962

CAGE analysis