Hb_000016_080

Information

Type -
Description -
Location Contig16: 140369-144103
Sequence    

Annotation

kegg
ID pop:POPTR_0015s13940g
description POPTRDRAFT_575740; hypothetical protein
nr
ID XP_012090344.1
description PREDICTED: uncharacterized protein LOC105648533 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JQR5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26176 PE=4 SV=1
Gene Ontology
ID GO:0005506
description 2-oxoglutarate and fe -dependent oxygenase superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14272: 140422-144210
cDNA
(Sanger)
(ID:Location)		 024_P04.ab1: 140430-142115

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000016_080 0.0 - - PREDICTED: uncharacterized protein LOC105648533 [Jatropha curcas]
2 Hb_000789_230 0.0600086567 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
3 Hb_000254_050 0.0646589225 - - hypothetical protein VITISV_010510 [Vitis vinifera]
4 Hb_007065_010 0.0702148356 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
5 Hb_000735_090 0.0751606902 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
6 Hb_001728_060 0.084015845 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
7 Hb_002613_020 0.0842745619 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]
8 Hb_072922_020 0.0845386725 - - SNARE-like superfamily protein [Theobroma cacao]
9 Hb_002110_200 0.0855573546 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_001512_080 0.0880921716 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
11 Hb_001989_090 0.0929464228 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
12 Hb_027654_050 0.0944513893 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
13 Hb_002111_040 0.0984111576 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
14 Hb_000302_280 0.0988543354 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
15 Hb_005463_140 0.1003169954 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
16 Hb_000571_020 0.1025057067 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
17 Hb_002183_060 0.1032536786 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
18 Hb_002609_200 0.1043200403 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_017225_020 0.1043914456 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
20 Hb_005307_050 0.1044086649 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]

Gene co-expression network

sample Hb_000016_080 Hb_000016_080 Hb_000789_230 Hb_000789_230 Hb_000016_080--Hb_000789_230 Hb_000254_050 Hb_000254_050 Hb_000016_080--Hb_000254_050 Hb_007065_010 Hb_007065_010 Hb_000016_080--Hb_007065_010 Hb_000735_090 Hb_000735_090 Hb_000016_080--Hb_000735_090 Hb_001728_060 Hb_001728_060 Hb_000016_080--Hb_001728_060 Hb_002613_020 Hb_002613_020 Hb_000016_080--Hb_002613_020 Hb_002110_200 Hb_002110_200 Hb_000789_230--Hb_002110_200 Hb_000789_230--Hb_007065_010 Hb_000789_230--Hb_000254_050 Hb_017413_010 Hb_017413_010 Hb_000789_230--Hb_017413_010 Hb_005463_140 Hb_005463_140 Hb_000789_230--Hb_005463_140 Hb_000254_050--Hb_002110_200 Hb_001512_080 Hb_001512_080 Hb_000254_050--Hb_001512_080 Hb_000571_020 Hb_000571_020 Hb_000254_050--Hb_000571_020 Hb_005269_080 Hb_005269_080 Hb_000254_050--Hb_005269_080 Hb_002798_020 Hb_002798_020 Hb_007065_010--Hb_002798_020 Hb_007065_010--Hb_000735_090 Hb_007065_010--Hb_002613_020 Hb_001989_090 Hb_001989_090 Hb_007065_010--Hb_001989_090 Hb_007747_050 Hb_007747_050 Hb_000735_090--Hb_007747_050 Hb_000735_090--Hb_001989_090 Hb_003494_050 Hb_003494_050 Hb_000735_090--Hb_003494_050 Hb_000085_350 Hb_000085_350 Hb_000735_090--Hb_000085_350 Hb_000159_130 Hb_000159_130 Hb_001728_060--Hb_000159_130 Hb_001575_060 Hb_001575_060 Hb_001728_060--Hb_001575_060 Hb_001006_020 Hb_001006_020 Hb_001728_060--Hb_001006_020 Hb_000107_150 Hb_000107_150 Hb_001728_060--Hb_000107_150 Hb_011457_050 Hb_011457_050 Hb_001728_060--Hb_011457_050 Hb_000431_070 Hb_000431_070 Hb_002613_020--Hb_000431_070 Hb_087749_010 Hb_087749_010 Hb_002613_020--Hb_087749_010 Hb_007576_170 Hb_007576_170 Hb_002613_020--Hb_007576_170 Hb_033153_060 Hb_033153_060 Hb_002613_020--Hb_033153_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.54934 2.32647 7.53745 13.0876 8.4004 7.29723
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5497 31.0486 15.2529 14.0456 12.2459

CAGE analysis