Hb_000016_100

Information

Type transcription factor
Description TF Family: TCP
Location Contig16: 150268-151386
Sequence    

Annotation

kegg
ID rcu:RCOM_1497810
description hypothetical protein
nr
ID XP_012090342.1
description PREDICTED: transcription factor TCP19 [Jatropha curcas]
swissprot
ID Q9LT89
description Transcription factor TCP19 OS=Arabidopsis thaliana GN=TCP19 PE=2 SV=1
trembl
ID B9R9I7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1497810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000016_100 0.0 transcription factor TF Family: TCP PREDICTED: transcription factor TCP19 [Jatropha curcas]
2 Hb_004032_270 0.1108214918 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
3 Hb_009838_050 0.112673189 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006582_020 0.1230363449 - - Zinc finger protein ZFPM1 [Theobroma cacao]
5 Hb_002435_110 0.1251671642 transcription factor TF Family: SNF2 PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Jatropha curcas]
6 Hb_000025_340 0.1416083278 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Jatropha curcas]
7 Hb_000390_150 0.1450701232 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105632469 [Jatropha curcas]
8 Hb_001817_160 0.1460259979 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001894_050 0.1470021302 - - PREDICTED: AMSH-like ubiquitin thioesterase 2 [Jatropha curcas]
10 Hb_002546_020 0.1477675806 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
11 Hb_000237_080 0.147792257 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
12 Hb_001564_080 0.1504263925 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
13 Hb_001318_030 0.1517452012 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
14 Hb_145979_010 0.1517559286 - - PREDICTED: uncharacterized protein LOC105172316 [Sesamum indicum]
15 Hb_002486_040 0.1520788109 - - -
16 Hb_000976_310 0.1528128276 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
17 Hb_076693_020 0.1542253058 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
18 Hb_000451_070 0.1543237822 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
19 Hb_000432_040 0.1558126624 - - PREDICTED: remorin-like [Jatropha curcas]
20 Hb_001016_110 0.156173771 desease resistance Gene Name: Lectin_legB hypothetical protein POPTR_0004s20690g [Populus trichocarpa]

Gene co-expression network

sample Hb_000016_100 Hb_000016_100 Hb_004032_270 Hb_004032_270 Hb_000016_100--Hb_004032_270 Hb_009838_050 Hb_009838_050 Hb_000016_100--Hb_009838_050 Hb_006582_020 Hb_006582_020 Hb_000016_100--Hb_006582_020 Hb_002435_110 Hb_002435_110 Hb_000016_100--Hb_002435_110 Hb_000025_340 Hb_000025_340 Hb_000016_100--Hb_000025_340 Hb_000390_150 Hb_000390_150 Hb_000016_100--Hb_000390_150 Hb_004032_270--Hb_009838_050 Hb_001318_030 Hb_001318_030 Hb_004032_270--Hb_001318_030 Hb_001610_110 Hb_001610_110 Hb_004032_270--Hb_001610_110 Hb_076693_020 Hb_076693_020 Hb_004032_270--Hb_076693_020 Hb_000567_210 Hb_000567_210 Hb_004032_270--Hb_000567_210 Hb_012807_050 Hb_012807_050 Hb_004032_270--Hb_012807_050 Hb_009838_050--Hb_076693_020 Hb_009838_050--Hb_012807_050 Hb_009838_050--Hb_001318_030 Hb_045793_010 Hb_045793_010 Hb_009838_050--Hb_045793_010 Hb_009838_050--Hb_002435_110 Hb_006582_020--Hb_002435_110 Hb_006582_020--Hb_004032_270 Hb_005843_100 Hb_005843_100 Hb_006582_020--Hb_005843_100 Hb_006582_020--Hb_001318_030 Hb_000237_080 Hb_000237_080 Hb_006582_020--Hb_000237_080 Hb_002435_110--Hb_000567_210 Hb_000859_060 Hb_000859_060 Hb_002435_110--Hb_000859_060 Hb_002685_170 Hb_002685_170 Hb_002435_110--Hb_002685_170 Hb_009767_100 Hb_009767_100 Hb_002435_110--Hb_009767_100 Hb_000592_090 Hb_000592_090 Hb_000025_340--Hb_000592_090 Hb_003498_090 Hb_003498_090 Hb_000025_340--Hb_003498_090 Hb_002272_080 Hb_002272_080 Hb_000025_340--Hb_002272_080 Hb_000025_340--Hb_009838_050 Hb_000530_010 Hb_000530_010 Hb_000025_340--Hb_000530_010 Hb_001817_160 Hb_001817_160 Hb_000025_340--Hb_001817_160 Hb_004230_040 Hb_004230_040 Hb_000390_150--Hb_004230_040 Hb_002400_400 Hb_002400_400 Hb_000390_150--Hb_002400_400 Hb_002007_240 Hb_002007_240 Hb_000390_150--Hb_002007_240 Hb_000230_520 Hb_000230_520 Hb_000390_150--Hb_000230_520 Hb_001472_120 Hb_001472_120 Hb_000390_150--Hb_001472_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.19005 9.03867 0.550131 1.49346 3.64959 4.18062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.73754 7.46381 3.15256 4.5119 1.64569

CAGE analysis