Hb_000016_160

Information

Type transcription factor
Description TF Family: C3H
Location Contig16: 194214-198220
Sequence    

Annotation

kegg
ID rcu:RCOM_1497630
description F-box and wd40 domain protein, putative (EC:2.7.11.7)
nr
ID XP_012090334.1
description PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
swissprot
ID Q9FNZ2
description Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1
trembl
ID A0A067JEM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26167 PE=4 SV=1
Gene Ontology
ID GO:0005515
description zinc finger ccch domain-containing protein 48

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14283: 197496-198337
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000016_160 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
2 Hb_004102_110 0.0668330414 - - Monothiol glutaredoxin-4, putative [Ricinus communis]
3 Hb_028515_010 0.0669031602 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
4 Hb_010812_120 0.0674182377 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
5 Hb_003697_040 0.0677625518 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
6 Hb_003605_090 0.0709384111 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
7 Hb_000120_020 0.0744605783 - - PREDICTED: inositol 3-kinase [Jatropha curcas]
8 Hb_003349_090 0.0764299686 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
9 Hb_001545_170 0.0764347737 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
10 Hb_004143_150 0.0780895791 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
11 Hb_009615_070 0.0788233081 - - type X protein phosphatase-II [Populus trichocarpa]
12 Hb_005488_200 0.079080932 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
13 Hb_003053_020 0.0799684613 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
14 Hb_009803_050 0.0810897854 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
15 Hb_000436_130 0.0811293698 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
16 Hb_012490_070 0.0819111417 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002878_020 0.0839116397 - - mitochondrial carrier protein, putative [Ricinus communis]
18 Hb_004837_160 0.0861455213 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
19 Hb_004696_080 0.0865101396 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
20 Hb_012019_010 0.0865841001 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]

Gene co-expression network

sample Hb_000016_160 Hb_000016_160 Hb_004102_110 Hb_004102_110 Hb_000016_160--Hb_004102_110 Hb_028515_010 Hb_028515_010 Hb_000016_160--Hb_028515_010 Hb_010812_120 Hb_010812_120 Hb_000016_160--Hb_010812_120 Hb_003697_040 Hb_003697_040 Hb_000016_160--Hb_003697_040 Hb_003605_090 Hb_003605_090 Hb_000016_160--Hb_003605_090 Hb_000120_020 Hb_000120_020 Hb_000016_160--Hb_000120_020 Hb_024439_010 Hb_024439_010 Hb_004102_110--Hb_024439_010 Hb_004143_150 Hb_004143_150 Hb_004102_110--Hb_004143_150 Hb_026527_050 Hb_026527_050 Hb_004102_110--Hb_026527_050 Hb_009615_070 Hb_009615_070 Hb_004102_110--Hb_009615_070 Hb_000527_060 Hb_000527_060 Hb_004102_110--Hb_000527_060 Hb_005568_120 Hb_005568_120 Hb_028515_010--Hb_005568_120 Hb_004837_160 Hb_004837_160 Hb_028515_010--Hb_004837_160 Hb_000373_130 Hb_000373_130 Hb_028515_010--Hb_000373_130 Hb_003349_090 Hb_003349_090 Hb_028515_010--Hb_003349_090 Hb_114310_080 Hb_114310_080 Hb_028515_010--Hb_114310_080 Hb_000985_060 Hb_000985_060 Hb_028515_010--Hb_000985_060 Hb_010812_120--Hb_003349_090 Hb_001633_210 Hb_001633_210 Hb_010812_120--Hb_001633_210 Hb_089032_030 Hb_089032_030 Hb_010812_120--Hb_089032_030 Hb_000250_060 Hb_000250_060 Hb_010812_120--Hb_000250_060 Hb_003994_260 Hb_003994_260 Hb_010812_120--Hb_003994_260 Hb_000477_060 Hb_000477_060 Hb_003697_040--Hb_000477_060 Hb_003697_040--Hb_003605_090 Hb_003053_020 Hb_003053_020 Hb_003697_040--Hb_003053_020 Hb_004934_100 Hb_004934_100 Hb_003697_040--Hb_004934_100 Hb_004889_010 Hb_004889_010 Hb_003697_040--Hb_004889_010 Hb_000783_020 Hb_000783_020 Hb_003697_040--Hb_000783_020 Hb_003605_090--Hb_000477_060 Hb_000703_350 Hb_000703_350 Hb_003605_090--Hb_000703_350 Hb_003605_090--Hb_009615_070 Hb_003605_090--Hb_004934_100 Hb_001252_130 Hb_001252_130 Hb_003605_090--Hb_001252_130 Hb_011381_080 Hb_011381_080 Hb_000120_020--Hb_011381_080 Hb_002742_090 Hb_002742_090 Hb_000120_020--Hb_002742_090 Hb_000120_020--Hb_028515_010 Hb_000108_190 Hb_000108_190 Hb_000120_020--Hb_000108_190 Hb_000254_050 Hb_000254_050 Hb_000120_020--Hb_000254_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8576 13.7471 11.144 21.6921 14.6643 15.478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.5703 44.5797 33.8238 18.8312 16.8054

CAGE analysis