Hb_000016_180

Information

Type -
Description -
Location Contig16: 201852-204773
Sequence    

Annotation

kegg
ID rcu:RCOM_1497600
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_012090330.1
description PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
swissprot
ID Q3E9C0
description Calcium-dependent protein kinase 34 OS=Arabidopsis thaliana GN=CPK34 PE=2 SV=1
trembl
ID A0A067JS19
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26165 PE=4 SV=1
Gene Ontology
ID GO:0004672
description calcium-dependent protein kinase 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14287: 200976-202632
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000016_180 0.0 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
2 Hb_113216_010 0.0689965997 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
3 Hb_000185_090 0.0868768814 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
4 Hb_000779_040 0.0929902299 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
5 Hb_002918_070 0.0946897842 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
6 Hb_000792_110 0.095222286 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
7 Hb_000213_060 0.0971715941 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
8 Hb_012760_200 0.0982672401 - - protein phsophatase-2a, putative [Ricinus communis]
9 Hb_000212_280 0.0993501593 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
10 Hb_000211_090 0.099484302 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
11 Hb_004102_130 0.1056577294 - - conserved hypothetical protein [Ricinus communis]
12 Hb_174865_050 0.1058666548 - - PREDICTED: neuroguidin [Jatropha curcas]
13 Hb_004531_090 0.1061594753 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
14 Hb_000211_080 0.1082815078 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
15 Hb_000890_220 0.108569786 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
16 Hb_001034_020 0.1096284009 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
17 Hb_002675_190 0.1098610932 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_019871_020 0.1102899069 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
19 Hb_003673_020 0.1103389534 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
20 Hb_006901_040 0.1104043678 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000016_180 Hb_000016_180 Hb_113216_010 Hb_113216_010 Hb_000016_180--Hb_113216_010 Hb_000185_090 Hb_000185_090 Hb_000016_180--Hb_000185_090 Hb_000779_040 Hb_000779_040 Hb_000016_180--Hb_000779_040 Hb_002918_070 Hb_002918_070 Hb_000016_180--Hb_002918_070 Hb_000792_110 Hb_000792_110 Hb_000016_180--Hb_000792_110 Hb_000213_060 Hb_000213_060 Hb_000016_180--Hb_000213_060 Hb_000212_280 Hb_000212_280 Hb_113216_010--Hb_000212_280 Hb_002837_070 Hb_002837_070 Hb_113216_010--Hb_002837_070 Hb_113216_010--Hb_000185_090 Hb_025048_040 Hb_025048_040 Hb_113216_010--Hb_025048_040 Hb_174865_050 Hb_174865_050 Hb_113216_010--Hb_174865_050 Hb_000211_090 Hb_000211_090 Hb_000185_090--Hb_000211_090 Hb_003666_050 Hb_003666_050 Hb_000185_090--Hb_003666_050 Hb_000185_090--Hb_000779_040 Hb_019871_020 Hb_019871_020 Hb_000185_090--Hb_019871_020 Hb_000890_220 Hb_000890_220 Hb_000779_040--Hb_000890_220 Hb_000779_040--Hb_000211_090 Hb_000608_340 Hb_000608_340 Hb_000779_040--Hb_000608_340 Hb_000779_040--Hb_000792_110 Hb_004531_090 Hb_004531_090 Hb_000779_040--Hb_004531_090 Hb_003673_020 Hb_003673_020 Hb_000779_040--Hb_003673_020 Hb_005000_270 Hb_005000_270 Hb_002918_070--Hb_005000_270 Hb_002918_070--Hb_000211_090 Hb_002918_070--Hb_000212_280 Hb_001486_120 Hb_001486_120 Hb_002918_070--Hb_001486_120 Hb_002918_070--Hb_000779_040 Hb_000134_360 Hb_000134_360 Hb_002918_070--Hb_000134_360 Hb_000792_110--Hb_000211_090 Hb_000792_110--Hb_000890_220 Hb_035360_010 Hb_035360_010 Hb_000792_110--Hb_035360_010 Hb_010189_010 Hb_010189_010 Hb_000792_110--Hb_010189_010 Hb_012760_200 Hb_012760_200 Hb_000792_110--Hb_012760_200 Hb_000213_060--Hb_010189_010 Hb_000213_060--Hb_113216_010 Hb_000213_060--Hb_000185_090 Hb_000466_060 Hb_000466_060 Hb_000213_060--Hb_000466_060 Hb_000213_060--Hb_002918_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
336.126 103.179 16.8795 28.6312 442.737 531.08
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
98.8456 40.7451 103.08 54.6033 15.7857

CAGE analysis