Hb_000016_220

Information

Type transcription factor
Description TF Family: AP2
Location Contig16: 222337-232296
Sequence    

Annotation

kegg
ID pop:POPTR_0012s13870g
description POPTRDRAFT_570519; hypothetical protein
nr
ID AAY43213.1
description CRT/DRE binding factor 1 [Hevea brasiliensis]
swissprot
ID Q9FJ93
description Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1
trembl
ID Q4KP31
description CRT/DRE binding factor 1 OS=Hevea brasiliensis GN=CBF1 PE=2 SV=1
Gene Ontology
ID GO:0003677
description c-repeat dehydration-responsive element-binding factor 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 005_K10.ab1: 231626-232406 , 011_G20.ab1: 231555-232406 , 011_L24.ab1: 222303-223079 , 015_L09.ab1: 222405-223079 , 029_A16.ab1: 231760-232406 , 029_D09.ab1: 222595-223110 , 032_B19.ab1: 231699-232406 , 046_I02.ab1: 231690-232406

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000016_220 0.0 transcription factor TF Family: AP2 CRT/DRE binding factor 1 [Hevea brasiliensis]
2 Hb_000230_210 0.0755755171 - - PREDICTED: uncharacterized protein LOC105631864 [Jatropha curcas]
3 Hb_022768_010 0.0921643497 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
4 Hb_005618_020 0.0961454526 - - hypothetical protein RCOM_1342750 [Ricinus communis]
5 Hb_002849_030 0.096626701 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
6 Hb_031862_150 0.096673432 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
7 Hb_048538_010 0.108632657 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Prunus mume]
8 Hb_000522_120 0.1117312839 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
9 Hb_001565_050 0.1131726888 - - PREDICTED: receptor-like protein kinase 5 [Eucalyptus grandis]
10 Hb_073870_020 0.1132357443 - - PREDICTED: probable receptor-like protein kinase At1g67000, partial [Jatropha curcas]
11 Hb_000086_600 0.1142955131 - - -
12 Hb_000563_460 0.116950502 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
13 Hb_000227_410 0.1171860999 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
14 Hb_006483_050 0.1172651024 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
15 Hb_034132_010 0.1172730842 - - hypothetical protein B456_007G015400 [Gossypium raimondii]
16 Hb_147137_020 0.1188565458 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
17 Hb_035391_010 0.1245041831 - - TMV resistance protein N, putative [Ricinus communis]
18 Hb_000347_360 0.1248746011 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
19 Hb_106810_010 0.1301010827 - - receptor serine/threonine kinase, putative [Ricinus communis]
20 Hb_015978_040 0.1307845673 - - PREDICTED: uncharacterized protein LOC105642609 [Jatropha curcas]

Gene co-expression network

sample Hb_000016_220 Hb_000016_220 Hb_000230_210 Hb_000230_210 Hb_000016_220--Hb_000230_210 Hb_022768_010 Hb_022768_010 Hb_000016_220--Hb_022768_010 Hb_005618_020 Hb_005618_020 Hb_000016_220--Hb_005618_020 Hb_002849_030 Hb_002849_030 Hb_000016_220--Hb_002849_030 Hb_031862_150 Hb_031862_150 Hb_000016_220--Hb_031862_150 Hb_048538_010 Hb_048538_010 Hb_000016_220--Hb_048538_010 Hb_000230_210--Hb_005618_020 Hb_000230_210--Hb_022768_010 Hb_000230_210--Hb_002849_030 Hb_034132_010 Hb_034132_010 Hb_000230_210--Hb_034132_010 Hb_106810_010 Hb_106810_010 Hb_000230_210--Hb_106810_010 Hb_022768_010--Hb_031862_150 Hb_015978_040 Hb_015978_040 Hb_022768_010--Hb_015978_040 Hb_022768_010--Hb_034132_010 Hb_001565_050 Hb_001565_050 Hb_022768_010--Hb_001565_050 Hb_005946_190 Hb_005946_190 Hb_022768_010--Hb_005946_190 Hb_005725_180 Hb_005725_180 Hb_022768_010--Hb_005725_180 Hb_000086_600 Hb_000086_600 Hb_005618_020--Hb_000086_600 Hb_005618_020--Hb_106810_010 Hb_125201_010 Hb_125201_010 Hb_005618_020--Hb_125201_010 Hb_004586_120 Hb_004586_120 Hb_005618_020--Hb_004586_120 Hb_117602_010 Hb_117602_010 Hb_005618_020--Hb_117602_010 Hb_000347_360 Hb_000347_360 Hb_002849_030--Hb_000347_360 Hb_073870_020 Hb_073870_020 Hb_002849_030--Hb_073870_020 Hb_000322_020 Hb_000322_020 Hb_002849_030--Hb_000322_020 Hb_009189_010 Hb_009189_010 Hb_002849_030--Hb_009189_010 Hb_000422_050 Hb_000422_050 Hb_002849_030--Hb_000422_050 Hb_002849_030--Hb_048538_010 Hb_031862_150--Hb_048538_010 Hb_147137_020 Hb_147137_020 Hb_031862_150--Hb_147137_020 Hb_000227_410 Hb_000227_410 Hb_031862_150--Hb_000227_410 Hb_031862_150--Hb_000086_600 Hb_142691_010 Hb_142691_010 Hb_031862_150--Hb_142691_010 Hb_048538_010--Hb_000347_360 Hb_048538_010--Hb_000227_410 Hb_000904_090 Hb_000904_090 Hb_048538_010--Hb_000904_090 Hb_048538_010--Hb_073870_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.01264 576.363 96.9923 51.0934 1.63143 1.2219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.24979 0.896415 0.5401 1.86225 11.6009

CAGE analysis