Hb_000016_280

Information

Type -
Description -
Location Contig16: 288608-292655
Sequence    

Annotation

kegg
ID tcc:TCM_015090
description Arginine/serine-rich splicing factor 35
nr
ID XP_007038588.1
description Arginine/serine-rich splicing factor 35 [Theobroma cacao]
swissprot
ID P92965
description Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana GN=RS40 PE=1 SV=2
trembl
ID A0A061G7R5
description Arginine/serine-rich splicing factor 35 OS=Theobroma cacao GN=TCM_015090 PE=4 SV=1
Gene Ontology
ID GO:0000166
description serine arginine-rich splicing factor rs40 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14296: 288609-291650 , PASA_asmbl_14297: 288609-292987 , PASA_asmbl_14298: 288661-290558
cDNA
(Sanger)
(ID:Location)		 004_F20.ab1: 288609-291669 , 012_K07.ab1: 288649-291685 , 013_G02.ab1: 288609-290076 , 017_F16.ab1: 288609-291515 , 028_I03.ab1: 288609-291528 , 036_F16.ab1: 288609-291694

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000016_280 0.0 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]
2 Hb_000116_570 0.0623646725 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
3 Hb_101151_020 0.0734866779 - - DNA binding protein, putative [Ricinus communis]
4 Hb_001227_110 0.0746871167 - - U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
5 Hb_000685_080 0.0805378269 - - protein binding protein, putative [Ricinus communis]
6 Hb_003125_060 0.0904781414 - - PREDICTED: snurportin-1 [Jatropha curcas]
7 Hb_010883_080 0.0924331618 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
8 Hb_002078_420 0.0933514349 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
9 Hb_012760_200 0.0972447484 - - protein phsophatase-2a, putative [Ricinus communis]
10 Hb_004032_350 0.0990426647 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
11 Hb_002133_030 0.1003669898 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
12 Hb_013753_010 0.1007344309 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
13 Hb_000093_130 0.1028166188 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
14 Hb_005399_020 0.1038783841 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]
15 Hb_001396_290 0.1057826619 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
16 Hb_002374_150 0.1064839961 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
17 Hb_000640_210 0.1066996972 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
18 Hb_006631_010 0.108218097 - - plasma membrane aquaporin 2 [Hevea brasiliensis]
19 Hb_005038_020 0.1092716488 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_009646_050 0.110132443 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000016_280 Hb_000016_280 Hb_000116_570 Hb_000116_570 Hb_000016_280--Hb_000116_570 Hb_101151_020 Hb_101151_020 Hb_000016_280--Hb_101151_020 Hb_001227_110 Hb_001227_110 Hb_000016_280--Hb_001227_110 Hb_000685_080 Hb_000685_080 Hb_000016_280--Hb_000685_080 Hb_003125_060 Hb_003125_060 Hb_000016_280--Hb_003125_060 Hb_010883_080 Hb_010883_080 Hb_000016_280--Hb_010883_080 Hb_000116_570--Hb_010883_080 Hb_000093_130 Hb_000093_130 Hb_000116_570--Hb_000093_130 Hb_000116_570--Hb_000685_080 Hb_000116_570--Hb_001227_110 Hb_009646_050 Hb_009646_050 Hb_000116_570--Hb_009646_050 Hb_000890_220 Hb_000890_220 Hb_101151_020--Hb_000890_220 Hb_013753_010 Hb_013753_010 Hb_101151_020--Hb_013753_010 Hb_000779_040 Hb_000779_040 Hb_101151_020--Hb_000779_040 Hb_007348_030 Hb_007348_030 Hb_101151_020--Hb_007348_030 Hb_012760_200 Hb_012760_200 Hb_101151_020--Hb_012760_200 Hb_000025_750 Hb_000025_750 Hb_001227_110--Hb_000025_750 Hb_001227_110--Hb_000093_130 Hb_001408_090 Hb_001408_090 Hb_001227_110--Hb_001408_090 Hb_000640_210 Hb_000640_210 Hb_001227_110--Hb_000640_210 Hb_025048_040 Hb_025048_040 Hb_001227_110--Hb_025048_040 Hb_000685_080--Hb_003125_060 Hb_000685_080--Hb_009646_050 Hb_005399_020 Hb_005399_020 Hb_000685_080--Hb_005399_020 Hb_002977_010 Hb_002977_010 Hb_000685_080--Hb_002977_010 Hb_002133_030 Hb_002133_030 Hb_000685_080--Hb_002133_030 Hb_003125_060--Hb_002133_030 Hb_027405_020 Hb_027405_020 Hb_003125_060--Hb_027405_020 Hb_000487_100 Hb_000487_100 Hb_003125_060--Hb_000487_100 Hb_023020_060 Hb_023020_060 Hb_003125_060--Hb_023020_060 Hb_007305_010 Hb_007305_010 Hb_003125_060--Hb_007305_010 Hb_001473_080 Hb_001473_080 Hb_010883_080--Hb_001473_080 Hb_010883_080--Hb_000685_080 Hb_001922_130 Hb_001922_130 Hb_010883_080--Hb_001922_130 Hb_000186_260 Hb_000186_260 Hb_010883_080--Hb_000186_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
585.14 365.999 96.6026 64.6275 639.637 541.361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
200.355 91.3147 98.7296 119.005 30.0925

CAGE analysis