Hb_000017_140

Information

Type -
Description -
Location Contig17: 186413-189331
Sequence    

Annotation

kegg
ID rcu:RCOM_1688080
description polygalacturonase, putative (EC:3.2.1.15)
nr
ID XP_002509850.1
description polygalacturonase, putative [Ricinus communis]
swissprot
ID A7PZL3
description Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1
trembl
ID B9RCG6
description Polygalacturonase, putative OS=Ricinus communis GN=RCOM_1688080 PE=3 SV=1
Gene Ontology
ID GO:0005576
description probable polygalacturonase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000017_140 0.0 - - polygalacturonase, putative [Ricinus communis]
2 Hb_000152_880 0.0664062536 - - -
3 Hb_007894_080 0.0781242449 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007101_140 0.0841101205 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
5 Hb_010264_010 0.0873441106 - - PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Jatropha curcas]
6 Hb_004466_090 0.0877016799 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004804_010 0.0962094173 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
8 Hb_000784_060 0.0979092418 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003894_180 0.1024557136 - - PREDICTED: uncharacterized protein LOC104245193, partial [Nicotiana sylvestris]
10 Hb_002518_230 0.1034125651 - - -
11 Hb_000665_210 0.1038674613 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
12 Hb_027506_030 0.1073527549 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
13 Hb_029639_030 0.1109029162 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 2-like [Jatropha curcas]
14 Hb_001269_660 0.1109524002 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
15 Hb_000152_570 0.1131358435 - - 21 kDa protein precursor, putative [Ricinus communis]
16 Hb_012395_060 0.113535632 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
17 Hb_000977_020 0.1176100432 - - beta-hexosaminidase, putative [Ricinus communis]
18 Hb_007370_010 0.1183516741 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
19 Hb_009421_070 0.118808861 - - PREDICTED: cell number regulator 1-like [Jatropha curcas]
20 Hb_004162_140 0.1193826768 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]

Gene co-expression network

sample Hb_000017_140 Hb_000017_140 Hb_000152_880 Hb_000152_880 Hb_000017_140--Hb_000152_880 Hb_007894_080 Hb_007894_080 Hb_000017_140--Hb_007894_080 Hb_007101_140 Hb_007101_140 Hb_000017_140--Hb_007101_140 Hb_010264_010 Hb_010264_010 Hb_000017_140--Hb_010264_010 Hb_004466_090 Hb_004466_090 Hb_000017_140--Hb_004466_090 Hb_004804_010 Hb_004804_010 Hb_000017_140--Hb_004804_010 Hb_000152_880--Hb_007101_140 Hb_000152_880--Hb_007894_080 Hb_033772_060 Hb_033772_060 Hb_000152_880--Hb_033772_060 Hb_029639_030 Hb_029639_030 Hb_000152_880--Hb_029639_030 Hb_027506_030 Hb_027506_030 Hb_000152_880--Hb_027506_030 Hb_007894_080--Hb_033772_060 Hb_007894_080--Hb_007101_140 Hb_007894_080--Hb_029639_030 Hb_000162_200 Hb_000162_200 Hb_007894_080--Hb_000162_200 Hb_007101_140--Hb_029639_030 Hb_000181_220 Hb_000181_220 Hb_007101_140--Hb_000181_220 Hb_004162_140 Hb_004162_140 Hb_007101_140--Hb_004162_140 Hb_032143_010 Hb_032143_010 Hb_010264_010--Hb_032143_010 Hb_001269_660 Hb_001269_660 Hb_010264_010--Hb_001269_660 Hb_000265_030 Hb_000265_030 Hb_010264_010--Hb_000265_030 Hb_000665_210 Hb_000665_210 Hb_010264_010--Hb_000665_210 Hb_010264_010--Hb_007101_140 Hb_004374_030 Hb_004374_030 Hb_004466_090--Hb_004374_030 Hb_016277_030 Hb_016277_030 Hb_004466_090--Hb_016277_030 Hb_000784_060 Hb_000784_060 Hb_004466_090--Hb_000784_060 Hb_002518_230 Hb_002518_230 Hb_004466_090--Hb_002518_230 Hb_000152_570 Hb_000152_570 Hb_004466_090--Hb_000152_570 Hb_004032_190 Hb_004032_190 Hb_004466_090--Hb_004032_190 Hb_004804_010--Hb_027506_030 Hb_138585_010 Hb_138585_010 Hb_004804_010--Hb_138585_010 Hb_085962_010 Hb_085962_010 Hb_004804_010--Hb_085962_010 Hb_012395_060 Hb_012395_060 Hb_004804_010--Hb_012395_060 Hb_010264_020 Hb_010264_020 Hb_004804_010--Hb_010264_020 Hb_169077_030 Hb_169077_030 Hb_004804_010--Hb_169077_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.45632 8.16298 16.4574 0.0116935 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.0709 14.506

CAGE analysis