Hb_000017_200

Information

Type -
Description -
Location Contig17: 250463-253480
Sequence    

Annotation

kegg
ID pop:POPTR_0003s13130g
description POPTRDRAFT_554403; fringe-related family protein
nr
ID XP_012086839.1
description PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JRF4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20554 PE=4 SV=1
Gene Ontology
ID GO:0016740
description fringe-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15830: 250104-253544 , PASA_asmbl_15831: 252826-253210 , PASA_asmbl_15832: 251330-251574
cDNA
(Sanger)
(ID:Location)		 032_I16.ab1: 250104-250903 , 033_N18.ab1: 250105-250767 , 046_J21.ab1: 250104-250865 , 046_P04.ab1: 250104-250831 , 048_M02.ab1: 250104-250848

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000017_200 0.0 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
2 Hb_001439_080 0.0956427985 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
3 Hb_007617_010 0.1052665474 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
4 Hb_051663_010 0.1059536212 - - receptor-kinase, putative [Ricinus communis]
5 Hb_168918_010 0.108585724 - - pectin acetylesterase, putative [Ricinus communis]
6 Hb_000922_200 0.1097874849 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
7 Hb_001080_190 0.1104472476 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
8 Hb_001638_200 0.1106872403 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
9 Hb_005890_020 0.1134282014 - - putative plant disease resistance family protein [Populus trichocarpa]
10 Hb_005976_110 0.1136939633 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
11 Hb_001544_090 0.1138187185 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
12 Hb_001514_030 0.1182563075 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
13 Hb_001674_010 0.1187473107 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
14 Hb_001079_060 0.119556491 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
15 Hb_002609_120 0.1213016288 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
16 Hb_001516_010 0.1227453536 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
17 Hb_000438_160 0.1229986568 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001095_020 0.1230127816 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
19 Hb_001148_110 0.1230793781 - - -
20 Hb_000009_270 0.1235810051 - - Calmodulin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000017_200 Hb_000017_200 Hb_001439_080 Hb_001439_080 Hb_000017_200--Hb_001439_080 Hb_007617_010 Hb_007617_010 Hb_000017_200--Hb_007617_010 Hb_051663_010 Hb_051663_010 Hb_000017_200--Hb_051663_010 Hb_168918_010 Hb_168918_010 Hb_000017_200--Hb_168918_010 Hb_000922_200 Hb_000922_200 Hb_000017_200--Hb_000922_200 Hb_001080_190 Hb_001080_190 Hb_000017_200--Hb_001080_190 Hb_001638_200 Hb_001638_200 Hb_001439_080--Hb_001638_200 Hb_001439_080--Hb_007617_010 Hb_001439_080--Hb_001080_190 Hb_009486_050 Hb_009486_050 Hb_001439_080--Hb_009486_050 Hb_000722_030 Hb_000722_030 Hb_001439_080--Hb_000722_030 Hb_007617_010--Hb_001080_190 Hb_001544_090 Hb_001544_090 Hb_007617_010--Hb_001544_090 Hb_001817_210 Hb_001817_210 Hb_007617_010--Hb_001817_210 Hb_007617_010--Hb_051663_010 Hb_005976_110 Hb_005976_110 Hb_007617_010--Hb_005976_110 Hb_001516_010 Hb_001516_010 Hb_051663_010--Hb_001516_010 Hb_000000_390 Hb_000000_390 Hb_051663_010--Hb_000000_390 Hb_111985_100 Hb_111985_100 Hb_051663_010--Hb_111985_100 Hb_051663_010--Hb_000922_200 Hb_032920_020 Hb_032920_020 Hb_051663_010--Hb_032920_020 Hb_051663_010--Hb_009486_050 Hb_001514_030 Hb_001514_030 Hb_168918_010--Hb_001514_030 Hb_007218_040 Hb_007218_040 Hb_168918_010--Hb_007218_040 Hb_003666_070 Hb_003666_070 Hb_168918_010--Hb_003666_070 Hb_004122_010 Hb_004122_010 Hb_168918_010--Hb_004122_010 Hb_168918_010--Hb_005976_110 Hb_004037_040 Hb_004037_040 Hb_168918_010--Hb_004037_040 Hb_000951_150 Hb_000951_150 Hb_000922_200--Hb_000951_150 Hb_000922_200--Hb_000000_390 Hb_004635_120 Hb_004635_120 Hb_000922_200--Hb_004635_120 Hb_000922_200--Hb_001638_200 Hb_012395_240 Hb_012395_240 Hb_000922_200--Hb_012395_240 Hb_001080_190--Hb_001544_090 Hb_001674_010 Hb_001674_010 Hb_001080_190--Hb_001674_010 Hb_001080_190--Hb_001638_200 Hb_017434_010 Hb_017434_010 Hb_001080_190--Hb_017434_010 Hb_000009_270 Hb_000009_270 Hb_001080_190--Hb_000009_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.279447 0.982093 21.8213 18.955 0.826423 0.107491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0188774 0.357427 1.17975 14.2186

CAGE analysis