Hb_000017_220

Information

Type -
Description -
Location Contig17: 280535-285951
Sequence    

Annotation

kegg
ID vvi:104881089
description uncharacterized LOC104881089
nr
ID XP_012086841.1
description PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JN33
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20557 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15836: 280535-282787 , PASA_asmbl_15837: 280535-282787 , PASA_asmbl_15840: 284391-285857
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000017_220 0.0 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
2 Hb_000028_130 0.0495647802 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
3 Hb_001635_120 0.0575498516 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
4 Hb_000025_280 0.0587162036 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]
5 Hb_001473_110 0.0668032242 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
6 Hb_004705_020 0.0672098272 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
7 Hb_001488_180 0.0700163295 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
8 Hb_005977_070 0.071191708 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
9 Hb_003768_050 0.0715170667 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
10 Hb_031042_050 0.071778624 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
11 Hb_003494_020 0.0724464908 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
12 Hb_000347_390 0.0743901108 - - PREDICTED: exportin-T [Jatropha curcas]
13 Hb_009767_080 0.0756740381 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
14 Hb_004030_080 0.0767796098 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
15 Hb_000836_380 0.0774937725 - - PREDICTED: C-terminal binding protein AN-like [Populus euphratica]
16 Hb_003168_110 0.0783312752 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
17 Hb_000069_470 0.0786456435 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
18 Hb_005582_040 0.0792464505 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
19 Hb_000317_370 0.0805517365 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
20 Hb_001628_070 0.080640579 - - hect ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000017_220 Hb_000017_220 Hb_000028_130 Hb_000028_130 Hb_000017_220--Hb_000028_130 Hb_001635_120 Hb_001635_120 Hb_000017_220--Hb_001635_120 Hb_000025_280 Hb_000025_280 Hb_000017_220--Hb_000025_280 Hb_001473_110 Hb_001473_110 Hb_000017_220--Hb_001473_110 Hb_004705_020 Hb_004705_020 Hb_000017_220--Hb_004705_020 Hb_001488_180 Hb_001488_180 Hb_000017_220--Hb_001488_180 Hb_031042_050 Hb_031042_050 Hb_000028_130--Hb_031042_050 Hb_000028_130--Hb_001635_120 Hb_001716_020 Hb_001716_020 Hb_000028_130--Hb_001716_020 Hb_000028_130--Hb_001473_110 Hb_003494_020 Hb_003494_020 Hb_000028_130--Hb_003494_020 Hb_005582_040 Hb_005582_040 Hb_001635_120--Hb_005582_040 Hb_000174_270 Hb_000174_270 Hb_001635_120--Hb_000174_270 Hb_001999_290 Hb_001999_290 Hb_001635_120--Hb_001999_290 Hb_001635_120--Hb_001473_110 Hb_004483_040 Hb_004483_040 Hb_000025_280--Hb_004483_040 Hb_000069_470 Hb_000069_470 Hb_000025_280--Hb_000069_470 Hb_000317_370 Hb_000317_370 Hb_000025_280--Hb_000317_370 Hb_004586_290 Hb_004586_290 Hb_000025_280--Hb_004586_290 Hb_000025_280--Hb_031042_050 Hb_000479_070 Hb_000479_070 Hb_001473_110--Hb_000479_070 Hb_001473_110--Hb_001488_180 Hb_001545_150 Hb_001545_150 Hb_001473_110--Hb_001545_150 Hb_000347_390 Hb_000347_390 Hb_001473_110--Hb_000347_390 Hb_000347_400 Hb_000347_400 Hb_001473_110--Hb_000347_400 Hb_001628_070 Hb_001628_070 Hb_004705_020--Hb_001628_070 Hb_006531_020 Hb_006531_020 Hb_004705_020--Hb_006531_020 Hb_000024_040 Hb_000024_040 Hb_004705_020--Hb_000024_040 Hb_004705_020--Hb_000025_280 Hb_005977_070 Hb_005977_070 Hb_004705_020--Hb_005977_070 Hb_001488_180--Hb_000028_130 Hb_001488_180--Hb_000479_070 Hb_004204_010 Hb_004204_010 Hb_001488_180--Hb_004204_010 Hb_010712_050 Hb_010712_050 Hb_001488_180--Hb_010712_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7815 21.8422 8.49916 14.3666 8.46141 13.8111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.45319 9.49676 14.8684 15.6762 17.6758

CAGE analysis