Hb_000017_260

Information

Type -
Description -
Location Contig17: 330377-334568
Sequence    

Annotation

kegg
ID pop:POPTR_0003s13070g
description POPTRDRAFT_646651; hypothetical protein
nr
ID XP_002303601.2
description hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9PCV7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13070g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15844: 330406-334545
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000017_260 0.0 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
2 Hb_053709_050 0.0872785313 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_000227_390 0.0922679547 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
4 Hb_185830_060 0.0924545486 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
5 Hb_002193_060 0.10565457 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
6 Hb_012262_030 0.1080052071 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
7 Hb_000590_120 0.1080439646 - - dehydroascorbate reductase, putative [Ricinus communis]
8 Hb_004994_180 0.1083396859 - - malic enzyme, putative [Ricinus communis]
9 Hb_002110_100 0.1084714732 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
10 Hb_000964_030 0.1086755801 - - ADP/ATP carrier 2 [Theobroma cacao]
11 Hb_007850_030 0.109015307 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
12 Hb_005653_070 0.1094633154 - - K+ transport growth defect-like protein [Hevea brasiliensis]
13 Hb_000120_810 0.1106309967 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
14 Hb_007441_080 0.1116862145 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
15 Hb_000684_030 0.1129831099 - - syntaxin, putative [Ricinus communis]
16 Hb_000704_030 0.1135234716 - - PREDICTED: probable aquaporin SIP2-1 [Cicer arietinum]
17 Hb_000069_640 0.1140623445 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
18 Hb_189216_010 0.1150653175 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
19 Hb_000197_020 0.1152235276 - - PREDICTED: protein RER1A [Jatropha curcas]
20 Hb_000243_350 0.1157821508 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Tarenaya hassleriana]

Gene co-expression network

sample Hb_000017_260 Hb_000017_260 Hb_053709_050 Hb_053709_050 Hb_000017_260--Hb_053709_050 Hb_000227_390 Hb_000227_390 Hb_000017_260--Hb_000227_390 Hb_185830_060 Hb_185830_060 Hb_000017_260--Hb_185830_060 Hb_002193_060 Hb_002193_060 Hb_000017_260--Hb_002193_060 Hb_012262_030 Hb_012262_030 Hb_000017_260--Hb_012262_030 Hb_000590_120 Hb_000590_120 Hb_000017_260--Hb_000590_120 Hb_001633_090 Hb_001633_090 Hb_053709_050--Hb_001633_090 Hb_007850_030 Hb_007850_030 Hb_053709_050--Hb_007850_030 Hb_006637_030 Hb_006637_030 Hb_053709_050--Hb_006637_030 Hb_000603_160 Hb_000603_160 Hb_053709_050--Hb_000603_160 Hb_002693_030 Hb_002693_030 Hb_053709_050--Hb_002693_030 Hb_189216_010 Hb_189216_010 Hb_053709_050--Hb_189216_010 Hb_001279_190 Hb_001279_190 Hb_000227_390--Hb_001279_190 Hb_007483_070 Hb_007483_070 Hb_000227_390--Hb_007483_070 Hb_000120_810 Hb_000120_810 Hb_000227_390--Hb_000120_810 Hb_004079_130 Hb_004079_130 Hb_000227_390--Hb_004079_130 Hb_003540_050 Hb_003540_050 Hb_000227_390--Hb_003540_050 Hb_000703_190 Hb_000703_190 Hb_000227_390--Hb_000703_190 Hb_185830_060--Hb_002193_060 Hb_001486_040 Hb_001486_040 Hb_185830_060--Hb_001486_040 Hb_000395_110 Hb_000395_110 Hb_185830_060--Hb_000395_110 Hb_005993_010 Hb_005993_010 Hb_185830_060--Hb_005993_010 Hb_000665_180 Hb_000665_180 Hb_185830_060--Hb_000665_180 Hb_005701_120 Hb_005701_120 Hb_185830_060--Hb_005701_120 Hb_000375_300 Hb_000375_300 Hb_002193_060--Hb_000375_300 Hb_002193_060--Hb_000395_110 Hb_018845_010 Hb_018845_010 Hb_002193_060--Hb_018845_010 Hb_000007_090 Hb_000007_090 Hb_002193_060--Hb_000007_090 Hb_007416_070 Hb_007416_070 Hb_002193_060--Hb_007416_070 Hb_000227_160 Hb_000227_160 Hb_012262_030--Hb_000227_160 Hb_000023_300 Hb_000023_300 Hb_012262_030--Hb_000023_300 Hb_004994_180 Hb_004994_180 Hb_012262_030--Hb_004994_180 Hb_012262_030--Hb_189216_010 Hb_008748_030 Hb_008748_030 Hb_012262_030--Hb_008748_030 Hb_001454_230 Hb_001454_230 Hb_012262_030--Hb_001454_230 Hb_001662_130 Hb_001662_130 Hb_000590_120--Hb_001662_130 Hb_000240_030 Hb_000240_030 Hb_000590_120--Hb_000240_030 Hb_066842_010 Hb_066842_010 Hb_000590_120--Hb_066842_010 Hb_001269_190 Hb_001269_190 Hb_000590_120--Hb_001269_190 Hb_002110_100 Hb_002110_100 Hb_000590_120--Hb_002110_100 Hb_004951_060 Hb_004951_060 Hb_000590_120--Hb_004951_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.32722 15.6421 32.3143 41.3194 5.12051 9.173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.8697 14.2333 17.4728 19.7638 21.6374

CAGE analysis