Hb_000017_340

Information

Type -
Description -
Location Contig17: 439874-447319
Sequence    

Annotation

kegg
ID pda:103705543
description GMP synthase [glutamine-hydrolyzing]-like
nr
ID XP_008787517.1
description PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
swissprot
ID B4SFX7
description GMP synthase [glutamine-hydrolyzing] OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=guaA PE=3 SV=1
trembl
ID B9SP14
description GMP synthase, putative OS=Ricinus communis GN=RCOM_1247670 PE=4 SV=1
Gene Ontology
ID GO:0005829
description gmp synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15849: 439866-447374
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000017_340 0.0 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
2 Hb_004608_020 0.0749400545 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
3 Hb_005288_120 0.0776763213 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
4 Hb_000568_040 0.0786399179 - - PREDICTED: mRNA-decapping enzyme subunit 2 [Jatropha curcas]
5 Hb_000370_030 0.082029241 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
6 Hb_063047_010 0.0822954356 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
7 Hb_000703_080 0.082868507 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
8 Hb_000078_100 0.0840392986 - - PREDICTED: topless-related protein 4-like isoform X2 [Jatropha curcas]
9 Hb_000814_090 0.086766406 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005635_010 0.0871436995 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
11 Hb_000042_230 0.0878000156 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]
12 Hb_009118_010 0.0883289893 - - methionine aminopeptidase, putative [Ricinus communis]
13 Hb_000028_030 0.0894552437 - - amidase, putative [Ricinus communis]
14 Hb_000152_740 0.0908957579 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
15 Hb_002046_040 0.0909477831 - - PREDICTED: topless-related protein 4 [Malus domestica]
16 Hb_000077_050 0.0926948016 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_003434_060 0.0927428054 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
18 Hb_000316_030 0.0941492618 - - zinc finger protein, putative [Ricinus communis]
19 Hb_000390_060 0.0945362548 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
20 Hb_118301_010 0.095852542 - - Endoribonuclease Dicer-1-like protein [Morus notabilis]

Gene co-expression network

sample Hb_000017_340 Hb_000017_340 Hb_004608_020 Hb_004608_020 Hb_000017_340--Hb_004608_020 Hb_005288_120 Hb_005288_120 Hb_000017_340--Hb_005288_120 Hb_000568_040 Hb_000568_040 Hb_000017_340--Hb_000568_040 Hb_000370_030 Hb_000370_030 Hb_000017_340--Hb_000370_030 Hb_063047_010 Hb_063047_010 Hb_000017_340--Hb_063047_010 Hb_000703_080 Hb_000703_080 Hb_000017_340--Hb_000703_080 Hb_009118_010 Hb_009118_010 Hb_004608_020--Hb_009118_010 Hb_000631_150 Hb_000631_150 Hb_004608_020--Hb_000631_150 Hb_000116_170 Hb_000116_170 Hb_004608_020--Hb_000116_170 Hb_000457_060 Hb_000457_060 Hb_004608_020--Hb_000457_060 Hb_000078_100 Hb_000078_100 Hb_004608_020--Hb_000078_100 Hb_035524_030 Hb_035524_030 Hb_005288_120--Hb_035524_030 Hb_010261_020 Hb_010261_020 Hb_005288_120--Hb_010261_020 Hb_002014_080 Hb_002014_080 Hb_005288_120--Hb_002014_080 Hb_000085_280 Hb_000085_280 Hb_005288_120--Hb_000085_280 Hb_000671_100 Hb_000671_100 Hb_005288_120--Hb_000671_100 Hb_007317_190 Hb_007317_190 Hb_000568_040--Hb_007317_190 Hb_001040_160 Hb_001040_160 Hb_000568_040--Hb_001040_160 Hb_000568_040--Hb_000370_030 Hb_002067_150 Hb_002067_150 Hb_000568_040--Hb_002067_150 Hb_001307_140 Hb_001307_140 Hb_000568_040--Hb_001307_140 Hb_000184_130 Hb_000184_130 Hb_000370_030--Hb_000184_130 Hb_000300_280 Hb_000300_280 Hb_000370_030--Hb_000300_280 Hb_000370_030--Hb_000457_060 Hb_004310_060 Hb_004310_060 Hb_000370_030--Hb_004310_060 Hb_000316_030 Hb_000316_030 Hb_000370_030--Hb_000316_030 Hb_001609_010 Hb_001609_010 Hb_063047_010--Hb_001609_010 Hb_063047_010--Hb_001040_160 Hb_001871_040 Hb_001871_040 Hb_063047_010--Hb_001871_040 Hb_063047_010--Hb_000316_030 Hb_110364_010 Hb_110364_010 Hb_063047_010--Hb_110364_010 Hb_004881_050 Hb_004881_050 Hb_063047_010--Hb_004881_050 Hb_000284_210 Hb_000284_210 Hb_000703_080--Hb_000284_210 Hb_002097_090 Hb_002097_090 Hb_000703_080--Hb_002097_090 Hb_004934_090 Hb_004934_090 Hb_000703_080--Hb_004934_090 Hb_003728_030 Hb_003728_030 Hb_000703_080--Hb_003728_030 Hb_001454_060 Hb_001454_060 Hb_000703_080--Hb_001454_060 Hb_000390_060 Hb_000390_060 Hb_000703_080--Hb_000390_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.2451 31.2255 7.85413 18.1087 89.673 149.392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
73.9065 33.1938 45.8459 43.8077 13.6892

CAGE analysis