Hb_000017_350

Information

Type -
Description -
Location Contig17: 449436-453064
Sequence    

Annotation

kegg
ID rcu:RCOM_1686990
description hypothetical protein
nr
ID XP_012086890.1
description PREDICTED: uncharacterized protein LOC105645799 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RCC7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1686990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15851: 449337-449716 , PASA_asmbl_15853: 451028-451258 , PASA_asmbl_15854: 452135-453186 , PASA_asmbl_15855: 453715-453944
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000017_350 0.0 - - PREDICTED: uncharacterized protein LOC105645799 isoform X2 [Jatropha curcas]
2 Hb_002498_160 0.1423916083 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
3 Hb_000789_120 0.1495759891 - - PREDICTED: derlin-1 isoform X1 [Jatropha curcas]
4 Hb_169209_010 0.1527804859 - - PREDICTED: porphobilinogen deaminase, chloroplastic [Jatropha curcas]
5 Hb_001124_190 0.1721763027 - - conserved hypothetical protein [Ricinus communis]
6 Hb_121089_040 0.1858273667 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
7 Hb_000473_050 0.188711625 - - chromatin regulatory protein sir2, putative [Ricinus communis]
8 Hb_000820_140 0.1919783778 - - histone H4 [Zea mays]
9 Hb_009851_010 0.1928165227 - - PREDICTED: beta-amylase 3, chloroplastic-like [Jatropha curcas]
10 Hb_000608_390 0.1951070464 - - hypothetical protein B456_010G140700 [Gossypium raimondii]
11 Hb_001124_180 0.195755119 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
12 Hb_001663_040 0.1978035233 - - hypothetical protein B456_007G162000 [Gossypium raimondii]
13 Hb_001102_050 0.2001538592 - - PREDICTED: fatty-acid-binding protein 3 [Jatropha curcas]
14 Hb_005725_220 0.2040585709 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
15 Hb_000042_290 0.2040931202 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
16 Hb_001399_010 0.2043713276 - - ATP binding protein, putative [Ricinus communis]
17 Hb_005470_030 0.2045495866 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X2 [Jatropha curcas]
18 Hb_189003_060 0.2051329706 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000049_180 0.2051670329 - - aromatic amino acid decarboxylase, putative [Ricinus communis]
20 Hb_002044_020 0.2059117583 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]

Gene co-expression network

sample Hb_000017_350 Hb_000017_350 Hb_002498_160 Hb_002498_160 Hb_000017_350--Hb_002498_160 Hb_000789_120 Hb_000789_120 Hb_000017_350--Hb_000789_120 Hb_169209_010 Hb_169209_010 Hb_000017_350--Hb_169209_010 Hb_001124_190 Hb_001124_190 Hb_000017_350--Hb_001124_190 Hb_121089_040 Hb_121089_040 Hb_000017_350--Hb_121089_040 Hb_000473_050 Hb_000473_050 Hb_000017_350--Hb_000473_050 Hb_002498_160--Hb_169209_010 Hb_000676_020 Hb_000676_020 Hb_002498_160--Hb_000676_020 Hb_002498_160--Hb_000473_050 Hb_000608_390 Hb_000608_390 Hb_002498_160--Hb_000608_390 Hb_002044_020 Hb_002044_020 Hb_002498_160--Hb_002044_020 Hb_002986_090 Hb_002986_090 Hb_002498_160--Hb_002986_090 Hb_001663_040 Hb_001663_040 Hb_000789_120--Hb_001663_040 Hb_000789_120--Hb_121089_040 Hb_000116_130 Hb_000116_130 Hb_000789_120--Hb_000116_130 Hb_000049_180 Hb_000049_180 Hb_000789_120--Hb_000049_180 Hb_001946_380 Hb_001946_380 Hb_000789_120--Hb_001946_380 Hb_001976_030 Hb_001976_030 Hb_000789_120--Hb_001976_030 Hb_169209_010--Hb_000473_050 Hb_169209_010--Hb_001124_190 Hb_000922_340 Hb_000922_340 Hb_169209_010--Hb_000922_340 Hb_012653_030 Hb_012653_030 Hb_169209_010--Hb_012653_030 Hb_000820_140 Hb_000820_140 Hb_169209_010--Hb_000820_140 Hb_001124_180 Hb_001124_180 Hb_001124_190--Hb_001124_180 Hb_005914_050 Hb_005914_050 Hb_001124_190--Hb_005914_050 Hb_000042_290 Hb_000042_290 Hb_001124_190--Hb_000042_290 Hb_001124_190--Hb_000676_020 Hb_000176_010 Hb_000176_010 Hb_001124_190--Hb_000176_010 Hb_121089_040--Hb_001946_380 Hb_121089_040--Hb_001976_030 Hb_001628_120 Hb_001628_120 Hb_121089_040--Hb_001628_120 Hb_000816_200 Hb_000816_200 Hb_121089_040--Hb_000816_200 Hb_001195_770 Hb_001195_770 Hb_121089_040--Hb_001195_770 Hb_003875_030 Hb_003875_030 Hb_121089_040--Hb_003875_030 Hb_006829_080 Hb_006829_080 Hb_000473_050--Hb_006829_080 Hb_189003_060 Hb_189003_060 Hb_000473_050--Hb_189003_060 Hb_158092_100 Hb_158092_100 Hb_000473_050--Hb_158092_100 Hb_009687_020 Hb_009687_020 Hb_000473_050--Hb_009687_020 Hb_001959_060 Hb_001959_060 Hb_000473_050--Hb_001959_060 Hb_000684_430 Hb_000684_430 Hb_000473_050--Hb_000684_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0153906 0.0124673 0.642586 0.29651 0.149229 0.0444563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.140419 0.147329 0.32841 0.170506 0.575544

CAGE analysis