Hb_000018_080

Information

Type -
Description -
Location Contig18: 75038-75489
Sequence    

Annotation

kegg
ID rcu:RCOM_0801620
description amino acid transporter, putative
nr
ID KDP34177.1
description hypothetical protein JCGZ_07748 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KDI6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07748 PE=4 SV=1
Gene Ontology
ID GO:0016021
description amino acid

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17411: 72511-74200 , PASA_asmbl_17412: 74248-75303
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000018_080 0.0 - - hypothetical protein JCGZ_07748 [Jatropha curcas]
2 Hb_007292_040 0.0021178953 - - Plastid developmental protein DAG [Theobroma cacao]
3 Hb_000762_100 0.0025476069 - - PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
4 Hb_001140_120 0.0028504759 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
5 Hb_002471_030 0.0030092051 - - PREDICTED: cyclin-J18 [Jatropha curcas]
6 Hb_014223_030 0.003436303 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220 [Jatropha curcas]
7 Hb_001098_060 0.0037106043 - - -
8 Hb_088508_010 0.0042056103 - - cytochrome P450, putative [Ricinus communis]
9 Hb_014776_010 0.0047423811 - - PREDICTED: receptor-like protein kinase 5 [Jatropha curcas]
10 Hb_007138_020 0.0056916784 - - hypothetical protein POPTR_0019s09630g [Populus trichocarpa]
11 Hb_001414_070 0.0058690535 - - Zinc finger protein GIS2 [Medicago truncatula]
12 Hb_003203_010 0.0063177665 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
13 Hb_004586_100 0.0108493035 - - PREDICTED: uncharacterized protein LOC105120428 isoform X2 [Populus euphratica]
14 Hb_000245_010 0.0112461082 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Populus euphratica]
15 Hb_028447_010 0.0113361726 - - hypothetical protein RCOM_1967580 [Ricinus communis]
16 Hb_001205_260 0.012900187 - - DWNN domain isoform 2 [Theobroma cacao]
17 Hb_004669_010 0.0162547944 - - hypothetical protein JCGZ_26481 [Jatropha curcas]
18 Hb_005858_010 0.0178054728 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
19 Hb_012758_020 0.0197309608 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
20 Hb_002383_010 0.0240545688 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]

Gene co-expression network

sample Hb_000018_080 Hb_000018_080 Hb_007292_040 Hb_007292_040 Hb_000018_080--Hb_007292_040 Hb_000762_100 Hb_000762_100 Hb_000018_080--Hb_000762_100 Hb_001140_120 Hb_001140_120 Hb_000018_080--Hb_001140_120 Hb_002471_030 Hb_002471_030 Hb_000018_080--Hb_002471_030 Hb_014223_030 Hb_014223_030 Hb_000018_080--Hb_014223_030 Hb_001098_060 Hb_001098_060 Hb_000018_080--Hb_001098_060 Hb_007292_040--Hb_000762_100 Hb_007292_040--Hb_001140_120 Hb_007292_040--Hb_001098_060 Hb_003203_010 Hb_003203_010 Hb_007292_040--Hb_003203_010 Hb_007292_040--Hb_002471_030 Hb_000762_100--Hb_001140_120 Hb_000762_100--Hb_001098_060 Hb_000762_100--Hb_003203_010 Hb_000762_100--Hb_002471_030 Hb_001140_120--Hb_001098_060 Hb_001140_120--Hb_003203_010 Hb_001140_120--Hb_002471_030 Hb_002471_030--Hb_014223_030 Hb_088508_010 Hb_088508_010 Hb_002471_030--Hb_088508_010 Hb_014776_010 Hb_014776_010 Hb_002471_030--Hb_014776_010 Hb_007138_020 Hb_007138_020 Hb_002471_030--Hb_007138_020 Hb_001414_070 Hb_001414_070 Hb_002471_030--Hb_001414_070 Hb_014223_030--Hb_088508_010 Hb_014223_030--Hb_014776_010 Hb_014223_030--Hb_007138_020 Hb_014223_030--Hb_001414_070 Hb_001098_060--Hb_003203_010 Hb_001098_060--Hb_002471_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.184135 0.351653 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis