Hb_000019_010

Information

Type -
Description -
Location Contig19: 4390-8218
Sequence    

Annotation

kegg
ID pop:POPTR_0012s10630g
description POPTRDRAFT_834365; serine palmitoyltransferase family protein
nr
ID XP_012067331.1
description PREDICTED: long chain base biosynthesis protein 2a [Jatropha curcas]
swissprot
ID Q9LSZ9
description Long chain base biosynthesis protein 2a OS=Arabidopsis thaliana GN=LCB2a PE=1 SV=1
trembl
ID A0A067L096
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26855 PE=3 SV=1
Gene Ontology
ID GO:0004758
description long chain base biosynthesis protein 2a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18862: 3833-8540
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000019_010 0.0 - - PREDICTED: long chain base biosynthesis protein 2a [Jatropha curcas]
2 Hb_029879_120 0.0903765497 - - conserved hypothetical protein [Ricinus communis]
3 Hb_011174_080 0.1119416518 - - PREDICTED: sulfite oxidase [Jatropha curcas]
4 Hb_003125_180 0.1236171011 - - hypothetical protein JCGZ_26440 [Jatropha curcas]
5 Hb_001702_050 0.1263919169 - - PREDICTED: probable protein S-acyltransferase 19 isoform X1 [Jatropha curcas]
6 Hb_001235_130 0.1324274159 - - -
7 Hb_003490_050 0.1353140571 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]
8 Hb_005116_140 0.1363219851 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
9 Hb_002805_090 0.1415837157 - - Ran GTPase binding protein, putative [Ricinus communis]
10 Hb_000668_110 0.1416930272 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
11 Hb_011032_010 0.1418881936 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
12 Hb_003006_080 0.1421555406 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like isoform X1 [Jatropha curcas]
13 Hb_001195_370 0.1431015031 - - -
14 Hb_102763_010 0.1450926226 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
15 Hb_000922_260 0.1455359274 - - PREDICTED: pantothenate kinase 2 [Jatropha curcas]
16 Hb_001473_170 0.1459583807 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
17 Hb_000366_030 0.1473156247 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Jatropha curcas]
18 Hb_000731_290 0.1490132223 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_000019_170 0.1493804142 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
20 Hb_003549_050 0.1497467598 - - PREDICTED: zinc phosphodiesterase ELAC protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000019_010 Hb_000019_010 Hb_029879_120 Hb_029879_120 Hb_000019_010--Hb_029879_120 Hb_011174_080 Hb_011174_080 Hb_000019_010--Hb_011174_080 Hb_003125_180 Hb_003125_180 Hb_000019_010--Hb_003125_180 Hb_001702_050 Hb_001702_050 Hb_000019_010--Hb_001702_050 Hb_001235_130 Hb_001235_130 Hb_000019_010--Hb_001235_130 Hb_003490_050 Hb_003490_050 Hb_000019_010--Hb_003490_050 Hb_029879_120--Hb_001702_050 Hb_029879_120--Hb_003125_180 Hb_029879_120--Hb_011174_080 Hb_029879_120--Hb_001235_130 Hb_000157_070 Hb_000157_070 Hb_029879_120--Hb_000157_070 Hb_011174_080--Hb_001235_130 Hb_000157_140 Hb_000157_140 Hb_011174_080--Hb_000157_140 Hb_002805_090 Hb_002805_090 Hb_011174_080--Hb_002805_090 Hb_000256_160 Hb_000256_160 Hb_011174_080--Hb_000256_160 Hb_011174_080--Hb_001702_050 Hb_011032_010 Hb_011032_010 Hb_003125_180--Hb_011032_010 Hb_169051_010 Hb_169051_010 Hb_003125_180--Hb_169051_010 Hb_000019_170 Hb_000019_170 Hb_003125_180--Hb_000019_170 Hb_000674_010 Hb_000674_010 Hb_003125_180--Hb_000674_010 Hb_003058_200 Hb_003058_200 Hb_003125_180--Hb_003058_200 Hb_001998_220 Hb_001998_220 Hb_001702_050--Hb_001998_220 Hb_000985_050 Hb_000985_050 Hb_001702_050--Hb_000985_050 Hb_005000_090 Hb_005000_090 Hb_001702_050--Hb_005000_090 Hb_021977_010 Hb_021977_010 Hb_001702_050--Hb_021977_010 Hb_001702_050--Hb_003125_180 Hb_001235_130--Hb_000256_160 Hb_007229_050 Hb_007229_050 Hb_001235_130--Hb_007229_050 Hb_005854_040 Hb_005854_040 Hb_001235_130--Hb_005854_040 Hb_005588_120 Hb_005588_120 Hb_001235_130--Hb_005588_120 Hb_009535_030 Hb_009535_030 Hb_001235_130--Hb_009535_030 Hb_002232_490 Hb_002232_490 Hb_003490_050--Hb_002232_490 Hb_000922_260 Hb_000922_260 Hb_003490_050--Hb_000922_260 Hb_003490_060 Hb_003490_060 Hb_003490_050--Hb_003490_060 Hb_000109_260 Hb_000109_260 Hb_003490_050--Hb_000109_260 Hb_005571_010 Hb_005571_010 Hb_003490_050--Hb_005571_010 Hb_001341_010 Hb_001341_010 Hb_003490_050--Hb_001341_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.28011 17.7839 11.024 31.7458 5.50862 11.2769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.16524 3.73294 1.42226 33.0299 44.2993

CAGE analysis