Hb_000019_030

Information

Type -
Description -
Location Contig19: 14521-18983
Sequence    

Annotation

kegg
ID rcu:RCOM_1445580
description vacuolar ATP synthase subunit C, putative (EC:3.6.3.14)
nr
ID XP_012489465.1
description PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
swissprot
ID Q9SDS7
description V-type proton ATPase subunit C OS=Arabidopsis thaliana GN=VHA-C PE=1 SV=1
trembl
ID A0A0D2QN50
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G072500 PE=4 SV=1
Gene Ontology
ID GO:0000221
description v-type proton atpase subunit c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18865: 14559-19754
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000019_030 0.0 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
2 Hb_005357_080 0.0477504394 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
3 Hb_001575_090 0.0548221923 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
4 Hb_000120_670 0.0584420715 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
5 Hb_011671_240 0.05878787 - - PREDICTED: WD repeat-containing protein WRAP73-like [Jatropha curcas]
6 Hb_000468_060 0.0608699901 - - ku P70 DNA helicase, putative [Ricinus communis]
7 Hb_000618_040 0.0648711155 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
8 Hb_001159_130 0.0656846077 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
9 Hb_003177_030 0.0657007199 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
10 Hb_000603_150 0.0692314109 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
11 Hb_003226_140 0.0701307007 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
12 Hb_007416_280 0.0705481908 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000676_250 0.0708291692 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
14 Hb_003693_070 0.0720810301 - - PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
15 Hb_001009_270 0.0723943472 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
16 Hb_032208_090 0.0727764216 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
17 Hb_019280_040 0.0731200081 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_005144_160 0.0736191704 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
19 Hb_000580_180 0.0739113457 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000451_010 0.0741440527 - - secretory carrier membrane protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000019_030 Hb_000019_030 Hb_005357_080 Hb_005357_080 Hb_000019_030--Hb_005357_080 Hb_001575_090 Hb_001575_090 Hb_000019_030--Hb_001575_090 Hb_000120_670 Hb_000120_670 Hb_000019_030--Hb_000120_670 Hb_011671_240 Hb_011671_240 Hb_000019_030--Hb_011671_240 Hb_000468_060 Hb_000468_060 Hb_000019_030--Hb_000468_060 Hb_000618_040 Hb_000618_040 Hb_000019_030--Hb_000618_040 Hb_005357_080--Hb_000618_040 Hb_002303_070 Hb_002303_070 Hb_005357_080--Hb_002303_070 Hb_000215_110 Hb_000215_110 Hb_005357_080--Hb_000215_110 Hb_003665_060 Hb_003665_060 Hb_005357_080--Hb_003665_060 Hb_003226_140 Hb_003226_140 Hb_005357_080--Hb_003226_140 Hb_001575_090--Hb_000468_060 Hb_001575_090--Hb_000120_670 Hb_001575_090--Hb_011671_240 Hb_014834_050 Hb_014834_050 Hb_001575_090--Hb_014834_050 Hb_003918_010 Hb_003918_010 Hb_001575_090--Hb_003918_010 Hb_003750_050 Hb_003750_050 Hb_000120_670--Hb_003750_050 Hb_000580_180 Hb_000580_180 Hb_000120_670--Hb_000580_180 Hb_003964_070 Hb_003964_070 Hb_000120_670--Hb_003964_070 Hb_001279_150 Hb_001279_150 Hb_000120_670--Hb_001279_150 Hb_000345_240 Hb_000345_240 Hb_000120_670--Hb_000345_240 Hb_000451_010 Hb_000451_010 Hb_011671_240--Hb_000451_010 Hb_011671_240--Hb_000618_040 Hb_004907_080 Hb_004907_080 Hb_011671_240--Hb_004907_080 Hb_019280_040 Hb_019280_040 Hb_011671_240--Hb_019280_040 Hb_000468_060--Hb_003226_140 Hb_000768_090 Hb_000768_090 Hb_000468_060--Hb_000768_090 Hb_000035_180 Hb_000035_180 Hb_000468_060--Hb_000035_180 Hb_000468_060--Hb_000120_670 Hb_000618_040--Hb_000451_010 Hb_008511_130 Hb_008511_130 Hb_000618_040--Hb_008511_130 Hb_007416_280 Hb_007416_280 Hb_000618_040--Hb_007416_280 Hb_000230_560 Hb_000230_560 Hb_000618_040--Hb_000230_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.7417 14.8379 23.8802 31.6592 26.0378 38.1697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.4951 29.1482 35.8052 27.0783 16.0202

CAGE analysis