Hb_000019_060

Information

Type -
Description -
Location Contig19: 34502-36661
Sequence    

Annotation

kegg
ID pop:POPTR_0001s32930g
description POPTRDRAFT_846338; phosphoglycerate/bisphosphoglycerate mutase family protein
nr
ID XP_012067334.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
swissprot
ID Q9LW32
description Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1
trembl
ID A0A067L0A1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000019_060 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
2 Hb_168319_030 0.0803037161 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
3 Hb_007075_050 0.0837156453 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000366_090 0.0895400981 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]
5 Hb_019654_090 0.0896207049 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
6 Hb_004128_180 0.0911061099 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_011030_020 0.0953374994 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
8 Hb_027472_170 0.0956254993 - - hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
9 Hb_001189_050 0.0997808865 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]
10 Hb_000574_350 0.1007538011 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
11 Hb_000019_130 0.1007648786 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
12 Hb_000935_050 0.105021949 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]
13 Hb_012799_100 0.1079439725 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
14 Hb_025557_030 0.1091442978 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
15 Hb_119600_040 0.10961476 - - hypothetical protein JCGZ_08045 [Jatropha curcas]
16 Hb_006846_110 0.1104582404 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
17 Hb_007747_200 0.1115484275 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
18 Hb_000002_050 0.1120801039 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
19 Hb_000236_140 0.112778134 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
20 Hb_004414_050 0.1164203853 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000019_060 Hb_000019_060 Hb_168319_030 Hb_168319_030 Hb_000019_060--Hb_168319_030 Hb_007075_050 Hb_007075_050 Hb_000019_060--Hb_007075_050 Hb_000366_090 Hb_000366_090 Hb_000019_060--Hb_000366_090 Hb_019654_090 Hb_019654_090 Hb_000019_060--Hb_019654_090 Hb_004128_180 Hb_004128_180 Hb_000019_060--Hb_004128_180 Hb_011030_020 Hb_011030_020 Hb_000019_060--Hb_011030_020 Hb_168319_030--Hb_000366_090 Hb_004375_150 Hb_004375_150 Hb_168319_030--Hb_004375_150 Hb_027472_170 Hb_027472_170 Hb_168319_030--Hb_027472_170 Hb_000117_090 Hb_000117_090 Hb_168319_030--Hb_000117_090 Hb_021409_030 Hb_021409_030 Hb_168319_030--Hb_021409_030 Hb_000935_050 Hb_000935_050 Hb_007075_050--Hb_000935_050 Hb_119600_040 Hb_119600_040 Hb_007075_050--Hb_119600_040 Hb_000019_130 Hb_000019_130 Hb_007075_050--Hb_000019_130 Hb_000236_140 Hb_000236_140 Hb_007075_050--Hb_000236_140 Hb_003687_100 Hb_003687_100 Hb_007075_050--Hb_003687_100 Hb_000033_020 Hb_000033_020 Hb_000366_090--Hb_000033_020 Hb_000366_090--Hb_000117_090 Hb_000110_320 Hb_000110_320 Hb_000366_090--Hb_000110_320 Hb_000366_090--Hb_004375_150 Hb_002056_060 Hb_002056_060 Hb_019654_090--Hb_002056_060 Hb_034406_020 Hb_034406_020 Hb_019654_090--Hb_034406_020 Hb_000072_080 Hb_000072_080 Hb_019654_090--Hb_000072_080 Hb_007645_080 Hb_007645_080 Hb_019654_090--Hb_007645_080 Hb_004951_040 Hb_004951_040 Hb_019654_090--Hb_004951_040 Hb_004128_180--Hb_000236_140 Hb_000997_400 Hb_000997_400 Hb_004128_180--Hb_000997_400 Hb_000059_220 Hb_000059_220 Hb_004128_180--Hb_000059_220 Hb_004128_180--Hb_027472_170 Hb_000297_200 Hb_000297_200 Hb_004128_180--Hb_000297_200 Hb_005162_070 Hb_005162_070 Hb_011030_020--Hb_005162_070 Hb_001189_050 Hb_001189_050 Hb_011030_020--Hb_001189_050 Hb_010608_050 Hb_010608_050 Hb_011030_020--Hb_010608_050 Hb_002205_130 Hb_002205_130 Hb_011030_020--Hb_002205_130 Hb_008695_100 Hb_008695_100 Hb_011030_020--Hb_008695_100 Hb_000617_150 Hb_000617_150 Hb_011030_020--Hb_000617_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.22318 1.74633 0.729651 0.645814 1.24945 2.40824
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.04266 5.07733 7.64879 1.7443 1.07993

CAGE analysis