Hb_000019_090

Information

Type -
Description -
Location Contig19: 59197-59921
Sequence    

Annotation

kegg
ID rcu:RCOM_1445460
description Thioredoxin H-type, putative
nr
ID XP_012067568.1
description PREDICTED: thioredoxin H4-1-like [Jatropha curcas]
swissprot
ID P85801
description Thioredoxin H-type OS=Populus jackii PE=1 SV=1
trembl
ID B9RGZ1
description Thioredoxin H-type, putative OS=Ricinus communis GN=RCOM_1445460 PE=4 SV=1
Gene Ontology
ID GO:0005634
description thioredoxin h-type-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000019_090 0.0 - - PREDICTED: thioredoxin H4-1-like [Jatropha curcas]
2 Hb_057597_020 0.004898804 - - PREDICTED: anti-H(O) lectin-like [Gossypium raimondii]
3 Hb_001396_060 0.0376745926 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001829_030 0.1099041979 - - PREDICTED: uncharacterized protein LOC105119087 [Populus euphratica]
5 Hb_008147_110 0.1553196212 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
6 Hb_105478_010 0.1763116032 - - PREDICTED: uncharacterized protein LOC105762101 [Gossypium raimondii]
7 Hb_000172_500 0.2109214965 - - conserved hypothetical protein [Ricinus communis]
8 Hb_183612_020 0.2111211192 - - PREDICTED: small heat shock protein, chloroplastic-like [Nelumbo nucifera]
9 Hb_000006_020 0.2181714593 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000015_240 0.2181714593 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000016_090 0.2181714593 - - -
12 Hb_000016_240 0.2181714593 transcription factor TF Family: LOB hypothetical protein POPTR_0012s13910g [Populus trichocarpa]
13 Hb_000028_020 0.2181714593 - - -
14 Hb_000028_300 0.2181714593 - - hypothetical protein 0_13835_01, partial [Pinus radiata]
15 Hb_000031_310 0.2181714593 transcription factor TF Family: Orphans hypothetical protein [Trichormus azollae]
16 Hb_000037_100 0.2181714593 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_000045_030 0.2181714593 - - -
18 Hb_000048_130 0.2181714593 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
19 Hb_000056_050 0.2181714593 - - PREDICTED: uncharacterized protein LOC104117826 [Nicotiana tomentosiformis]
20 Hb_000070_150 0.2181714593 - - hypothetical protein POPTR_0004s19980g [Populus trichocarpa]

Gene co-expression network

sample Hb_000019_090 Hb_000019_090 Hb_057597_020 Hb_057597_020 Hb_000019_090--Hb_057597_020 Hb_001396_060 Hb_001396_060 Hb_000019_090--Hb_001396_060 Hb_001829_030 Hb_001829_030 Hb_000019_090--Hb_001829_030 Hb_008147_110 Hb_008147_110 Hb_000019_090--Hb_008147_110 Hb_105478_010 Hb_105478_010 Hb_000019_090--Hb_105478_010 Hb_000172_500 Hb_000172_500 Hb_000019_090--Hb_000172_500 Hb_057597_020--Hb_001396_060 Hb_057597_020--Hb_001829_030 Hb_057597_020--Hb_008147_110 Hb_057597_020--Hb_105478_010 Hb_057597_020--Hb_000172_500 Hb_001396_060--Hb_001829_030 Hb_001396_060--Hb_008147_110 Hb_001396_060--Hb_105478_010 Hb_183612_020 Hb_183612_020 Hb_001396_060--Hb_183612_020 Hb_001829_030--Hb_008147_110 Hb_001829_030--Hb_105478_010 Hb_003053_040 Hb_003053_040 Hb_001829_030--Hb_003053_040 Hb_008147_110--Hb_105478_010 Hb_008147_110--Hb_003053_040 Hb_003462_130 Hb_003462_130 Hb_008147_110--Hb_003462_130 Hb_105478_010--Hb_003053_040 Hb_105478_010--Hb_003462_130 Hb_005357_190 Hb_005357_190 Hb_105478_010--Hb_005357_190 Hb_001217_030 Hb_001217_030 Hb_105478_010--Hb_001217_030 Hb_000893_030 Hb_000893_030 Hb_000172_500--Hb_000893_030 Hb_009164_020 Hb_009164_020 Hb_000172_500--Hb_009164_020 Hb_005015_040 Hb_005015_040 Hb_000172_500--Hb_005015_040 Hb_009554_020 Hb_009554_020 Hb_000172_500--Hb_009554_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.580342 0 0 0.0587988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis